Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories Loading

  1. GEDI GEDI Public

    Gene Expression Decomposition and Integration

    HTML 19

  2. REMBRANDTS REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R 14 11

  3. CRIES CRIES Public

    Counting Reads for Intronic and Exonic Segments

    R 9 2

  4. DiffRAC DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    R 8 1

  5. MPAQT MPAQT Public

    Shell 8

  6. RCADE2 RCADE2 Public

    Recognition Code-Assisted Discovery of regulatory Elements v2

    C++ 5 1

Repositories

Showing 10 of 31 repositories
  • MAGIX Public

    MAGIX: Model-based Analysis of Genomic Intervals with eXponential enrichment.

    csglab/MAGIX’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Mar 18, 2026
  • sclsd Public

    scLSD: A Latent Space Thermodynamic Model of Cell Differentiation

    csglab/sclsd’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 3, 2026
  • gedi2 Public

    A high-performance R package for single-cell genomics

    csglab/gedi2’s past year of commit activity
    R 2 0 0 0 Updated Feb 22, 2026
  • gedi2_manuscript Public

    Reproducible Code for the gedi2 Manuscript

    csglab/gedi2_manuscript’s past year of commit activity
    R 0 0 0 0 Updated Feb 11, 2026
  • GEDI Public

    Gene Expression Decomposition and Integration

    csglab/GEDI’s past year of commit activity
    HTML 19 BSD-2-Clause 0 1 0 Updated Feb 9, 2026
  • gedi2py Public

    A high-performance Python package for single-cell genomics

    csglab/gedi2py’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 29, 2026
  • sclsd-manuscript Public

    Notebooks for reproducing manuscript figures and analyses.

    csglab/sclsd-manuscript’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 22, 2026
  • splikit Public

    Splikit /ˈsplaɪ.kɪt/ is a toolkit designed for analyzing high-dimensional single-cell splicing data.

    csglab/splikit’s past year of commit activity
    R 1 0 0 0 Updated Dec 19, 2025
  • mach-1-manuscript Public

    Pre-/Post-Mach-1 Analyses Scripts and Notebooks

    csglab/mach-1-manuscript’s past year of commit activity
    R 0 MIT 1 1 0 Updated Oct 3, 2025
  • mach-1.5-prep Public

    Scripts to download, preprocess, and compress NCBI RefSeq annotations and genomes for training Mach-1.5 models.

    csglab/mach-1.5-prep’s past year of commit activity
    R 0 0 0 0 Updated Jul 15, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…