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@czi-ai

Chan Zuckerberg Initiative - AI

Finding new ways to leverage technology, community-driven solutions, and collaboration to accelerate progress in science and education.
README.md

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BUILDING A BETTER FUTURE FOR EVERYONE

We’re on an ambitious mission to solve some of society’s toughest challenges — from eradicating disease to improving education and addressing the needs of our local communities.

Code of Conduct

This project adheres to the Contributor Covenant code of conduct. By participating, you are expected to uphold this code. Please report unacceptable behavior to opensource@chanzuckerberg.com.

Reporting Security Issues

If you believe you have found a security issue, please responsibly disclose by contacting us at security@chanzuckerberg.com.

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  1. scGenePT scGenePT Public

    Jupyter Notebook 30 9

  2. sub-cell-embed sub-cell-embed Public

    Forked from CellProfiling/subcell-embed

    Python 5

Repositories

Showing 10 of 16 repositories
  • scldm Public

    single-cell latent diffusion model

    czi-ai/scldm’s past year of commit activity
    Python 38 MIT 6 1 1 Updated Feb 10, 2026
  • FlexTPP Public

    Framework for easy mixed-type autoregressive models

    czi-ai/FlexTPP’s past year of commit activity
    Python 2 0 0 1 Updated Feb 7, 2026
  • variantformer Public

    VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations

    czi-ai/variantformer’s past year of commit activity
    Python 25 MIT 4 9 0 Updated Jan 13, 2026
  • GREmLN Public

    A Cellular Regulatory Network-Aware Transcriptomics Foundation Model

    czi-ai/GREmLN’s past year of commit activity
    Jupyter Notebook 35 MIT 10 2 1 Updated Dec 18, 2025
  • oc-guidance Public

    Official Implementation of the paper "Variational Control for Guidance in Diffusion Models" accepted at ICML'25

    czi-ai/oc-guidance’s past year of commit activity
    Python 18 MIT 0 2 8 Updated Dec 5, 2025
  • rbio Public

    Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers

    czi-ai/rbio’s past year of commit activity
    Python 133 20 1 0 Updated Nov 24, 2025
  • DrugMechCounterfactuals Public

    Drug Mechanisms Counterfactuals dataset for evaluating LLMs

    czi-ai/DrugMechCounterfactuals’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Nov 13, 2025
  • transcriptformer Public
    czi-ai/transcriptformer’s past year of commit activity
    Jupyter Notebook 101 MIT 24 2 1 Updated Nov 6, 2025
  • cryolens Public

    Generative model for reconstruction of structures from cryoET

    czi-ai/cryolens’s past year of commit activity
    Python 15 MIT 2 0 0 Updated Nov 6, 2025
  • napari-cryolens Public
    czi-ai/napari-cryolens’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 4, 2025
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