examples-develop #151
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examples-develop #151
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area_under_conc_curve file contains information on the AUC (Area Under the Curve), which, in the context of drug sensitivity assays, refers to the area under the concentration-response curve of a drug in a specific cell line. The other file has metadata information
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Pull Request Overview
This PR introduces new execution examples for three different datasets along with updated CSV result files for various analyses and corresponding R scripts. Key changes include:
- Addition of new example R scripts (example1.R, example2.R, example2b.R, example3.R) for gene expression, alveolar macrophages, and drug sensitivity.
- Updates to CSV result files and the inclusion of an expanded cell line info dataset.
- README updates to reference the new examples folder.
Reviewed Changes
Copilot reviewed 23 out of 23 changed files in this pull request and generated 2 comments.
Show a summary per file
| File | Description |
|---|---|
| examples/gene_expression_results/TVS.csv | New CSV results for gene expression analysis. |
| examples/example1.R | New example for gene expression analysis via R. |
| examples/example2.R | New example for drug sensitivity analysis with design matrix. |
| examples/example2b.R | Auxiliary script to generate plots with labels. |
| examples/example3.R | New example showing alveolar macrophages analysis in R. |
| examples/cancer_drug_embryonic_results/TVS.csv | New CSV results for cancer drug embryonic analysis. |
| examples/COPD_tabaco_analysis_results/TVS.csv | New CSV results for COPD tobacco analysis. |
| datasets/v10.M2.cell_line_info.txt | Inclusion of updated cell line info dataset. |
| README.md | Updated documentation to include the examples folder reference. |
Comments suppressed due to low confidence (1)
examples/example2.R:84
- [nitpick] The variable name 'F_design_matrix_embrionario' is inconsistent; consider renaming it to 'F_design_matrix_embryonic' for clarity and uniformity.
F_design_matrix_embrionario <- data.frame(
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