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Feb lit update + additional PRs#324

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hdashnow merged 20 commits intomainfrom
Feb-Lit-update-+-additional-PRs
Feb 18, 2026
Merged

Feb lit update + additional PRs#324
hdashnow merged 20 commits intomainfrom
Feb-Lit-update-+-additional-PRs

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@Macayla-weiner
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@Macayla-weiner Macayla-weiner commented Feb 11, 2026

Description

Summarize the changes

Fixes: #318 , #295 , #317 , #284. #322, #319, #308

Major Changes

Minor Changes

  • FMR1 gene updated to fragile X messenger ribonucleoprotein 1 in FXS description
  • Added phenotype for premutation to FXTAS
  • Additional mechanism detail added to NIID
  • Added phenotype to CCHS
  • FTDALS1 pathogenic minimum brought down to 31 (intermediate brought down to 30)

Checklist

  • All changes are well summarized
  • Check all tests pass
  • Check that the website preview looks good
  • Update the STRchive version in CITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.
  • Ask someone to review this PR

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@Macayla-weiner
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Macayla-weiner commented Feb 11, 2026

Citations aren't populating and AFF2 HPO terms aren't showing in the web preview

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I made a couple of small sugestions.

Macayla-weiner and others added 20 commits February 17, 2026 17:12
Grammar edit and XID name change from XLMR
**Please edit this description as you work on this PR**

This PR introduces changes from automated literature retrieval followed
by manual curation.

Fixes: # **Link to any relevant issues and/or discussions**

- New locus or major change to existing locus e.g. pathogenic threshold,
coordinate

- Minor change to existing locus e.g. new citation

- [ ] Check I've included all literature since the last "Literature
Update" PR (may need to diff against an earlier version)
- [ ] Check for updates to existing loci
- [ ] Check for potential new loci
- [ ] Add any changes to `STRchive-loci.json` as commits to this
branch/PR
- [ ] If anything needs to be discussed further before adding to
STRchive, add it to
[Discussions](https://github.com/dashnowlab/STRchive/discussions)
- [ ] Check all tests pass e.g. the website built
- [ ] Check that the website preview looks good
- [ ] Update the STRchive version in `CITATION.cff`, format X.Y.Z. If
any major changes, increment Y. If only minor changes, increment Z. If
the breaking change (rare), increment X.
- [ ] Ask someone to review this PR

Co-authored-by: hdashnow <3794821+hdashnow@users.noreply.github.com>
This PR introduces changes from automated literature retrieval followed
by manual curation.

Co-authored-by: hdashnow <3794821+hdashnow@users.noreply.github.com>
**Please edit this description as you work on this PR**

This PR introduces changes from automated literature retrieval followed
by manual curation.

Fixes: # **Link to any relevant issues and/or discussions**

- New locus or major change to existing locus e.g. pathogenic threshold,
coordinate

- Minor change to existing locus e.g. new citation

- [ ] Check I've included all literature since the last "Literature
Update" PR (may need to diff against an earlier version)
- [ ] Check for updates to existing loci
- [ ] Check for potential new loci
- [ ] Add any changes to `STRchive-loci.json` as commits to this
branch/PR
- [ ] If anything needs to be discussed further before adding to
STRchive, add it to
[Discussions](https://github.com/dashnowlab/STRchive/discussions)
- [ ] Check all tests pass e.g. the website built
- [ ] Check that the website preview looks good
- [ ] Update the STRchive version in `CITATION.cff`, format X.Y.Z. If
any major changes, increment Y. If only minor changes, increment Z. If
the breaking change (rare), increment X.
- [ ] Ask someone to review this PR

Co-authored-by: hdashnow <3794821+hdashnow@users.noreply.github.com>
**Please edit this description as you work on this PR**

This PR introduces changes from automated literature retrieval followed
by manual curation.

Fixes: # **Link to any relevant issues and/or discussions**

- New locus or major change to existing locus e.g. pathogenic threshold,
coordinate

- Minor change to existing locus e.g. new citation

- [ ] Check I've included all literature since the last "Literature
Update" PR (may need to diff against an earlier version)
- [ ] Check for updates to existing loci
- [ ] Check for potential new loci
- [ ] Add any changes to `STRchive-loci.json` as commits to this
branch/PR
- [ ] If anything needs to be discussed further before adding to
STRchive, add it to
[Discussions](https://github.com/dashnowlab/STRchive/discussions)
- [ ] Check all tests pass e.g. the website built
- [ ] Check that the website preview looks good
- [ ] Update the STRchive version in `CITATION.cff`, format X.Y.Z. If
any major changes, increment Y. If only minor changes, increment Z. If
the breaking change (rare), increment X.
- [ ] Ask someone to review this PR

Co-authored-by: hdashnow <3794821+hdashnow@users.noreply.github.com>
@hdashnow hdashnow force-pushed the Feb-Lit-update-+-additional-PRs branch from cbc2d61 to bd9798e Compare February 18, 2026 00:14
@hdashnow hdashnow merged commit ce1dc3b into main Feb 18, 2026
0 of 2 checks passed
@hdashnow hdashnow deleted the Feb-Lit-update-+-additional-PRs branch February 18, 2026 00:16
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2 participants