datashield · StuartWheater · Dec 5, 2025 · Nov 21, 2025 · Nov 21, 2025 · Nov 26, 2025
diff --git a/.github/workflows/dsBase_test_suite.yaml b/.github/workflows/dsBase_test_suite.yaml
@@ -15,7 +15,6 @@ on:
   push:
   schedule:
     - cron: '0 0 * * 0'   # Weekly
-    - cron: '0 1 * * *'   # Nightly
 
 jobs:
   dsBase_test_suite:
@@ -153,28 +152,30 @@ jobs:
           echo "branch:${{ env.BRANCH_NAME }}" > ${{ env.WORKFLOW_ID }}.txt
           echo "os:$(lsb_release -ds)" >> ${{ env.WORKFLOW_ID }}.txt
           echo "R:$(R --version | head -n1)" >> ${{ env.WORKFLOW_ID }}.txt
+          Rscript --vanilla -e 'sessionInfo()' >> session_info_${{ env.WORKFLOW_ID }}.txt
         working-directory: dsBase/logs
 
       - name: Parse results from testthat and covr
         run: |
-          Rscript --verbose --vanilla ../testStatus/source/parse_test_report.R logs/
+          Rscript --verbose --vanilla ../testStatus/source/parse_test_report.R logs/ logs/ https://github.com/datashield/${{ env.PROJECT_NAME }}/blob/${{ env.BRANCH_NAME }} '[^-:.]+' '(?<=::)[^:]+(?=::)'
         working-directory: dsBase
+        env:
+          PROJECT_NAME: ${{ env.PROJECT_NAME }}
+          BRANCH_NAME: ${{ env.BRANCH_NAME }}
 
       - name: Render report
         run: |
           cd testStatus
 
           mkdir -p new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
-          mkdir -p new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
           mkdir -p new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest/
 
           # Copy logs to new logs directory location
           cp -rv ../${{ env.PROJECT_NAME }}/logs/* new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
           cp -rv ../${{ env.PROJECT_NAME }}/logs/${{ env.WORKFLOW_ID }}.txt new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
 
           R -e 'input_dir <- file.path("../new/logs", Sys.getenv("PROJECT_NAME"), Sys.getenv("BRANCH_NAME"), Sys.getenv("WORKFLOW_ID")); quarto::quarto_render("source/test_report.qmd", execute_params = list(input_dir = input_dir))'
-          mv source/test_report.html new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/index.html
-          cp -r new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/* new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest
+          mv source/test_report.html new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest/index.html
 
         env:
           PROJECT_NAME: ${{ env.PROJECT_NAME }}

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -5,7 +5,7 @@ Description: Base 'DataSHIELD' functions for the server side. 'DataSHIELD' is a
     been designed to only share non disclosive summary statistics, with built in automated output
     checking based on statistical disclosure control. With data sites setting the threshold values for
     the automated output checks. For more details, see 'citation("dsBase")'.
-Version: 6.3.4
+Version: 6.3.5.9000
 Authors@R: c(person(given = "Paul",
                     family = "Burton",
                     role = c("aut"),

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,5 +1,5 @@
 pandoc: 3.1.3
-pkgdown: 2.1.3
+pkgdown: 2.2.0
 pkgdown_sha: ~
 articles: {}
-last_built: 2025-09-17T15:04Z
+last_built: 2025-11-30T16:44Z
diff --git a/docs/reference/BooleDS.html b/docs/reference/BooleDS.html
diff --git a/docs/reference/absDS.html b/docs/reference/absDS.html
diff --git a/docs/reference/asCharacterDS.html b/docs/reference/asCharacterDS.html
diff --git a/docs/reference/asDataMatrixDS.html b/docs/reference/asDataMatrixDS.html
diff --git a/docs/reference/asFactorDS1.html b/docs/reference/asFactorDS1.html
diff --git a/docs/reference/asFactorDS2.html b/docs/reference/asFactorDS2.html
diff --git a/docs/reference/asFactorSimpleDS.html b/docs/reference/asFactorSimpleDS.html
diff --git a/docs/reference/asIntegerDS.html b/docs/reference/asIntegerDS.html
diff --git a/docs/reference/asListDS.html b/docs/reference/asListDS.html
diff --git a/docs/reference/asLogicalDS.html b/docs/reference/asLogicalDS.html
diff --git a/docs/reference/asMatrixDS.html b/docs/reference/asMatrixDS.html
diff --git a/docs/reference/asNumericDS.html b/docs/reference/asNumericDS.html
diff --git a/docs/reference/aucDS.html b/docs/reference/aucDS.html
diff --git a/docs/reference/blackBoxDS.html b/docs/reference/blackBoxDS.html