misc: Ruff manual changes

[JDBetteridge]

All of the manual changes needed to pass new linting rules

[review-notebook-app]

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[codecov]

Codecov Report

❌ Patch coverage is 90.16641% with 65 lines in your changes missing coverage. Please review.
✅ Project coverage is 45.08%. Comparing base (f020eb1) to head (35f179c).

Files with missing lines	Patch %	Lines
devito/arch/compiler.py	46.15%	14 Missing ⚠️
tests/test_dimension.py	43.75%	9 Missing ⚠️
devito/passes/iet/langbase.py	40.00%	6 Missing ⚠️
tests/test_data.py	33.33%	6 Missing ⚠️
conftest.py	50.00%	4 Missing ⚠️
tests/test_subdomains.py	55.55%	4 Missing ⚠️
devito/ir/stree/tree.py	50.00%	3 Missing ⚠️
devito/mpi/distributed.py	77.77%	2 Missing ⚠️
devito/passes/iet/languages/openacc.py	77.77%	2 Missing ⚠️
devito/passes/iet/parpragma.py	77.77%	2 Missing ⚠️
... and 12 more

❗ There is a different number of reports uploaded between BASE (f020eb1) and HEAD (35f179c). Click for more details.

HEAD has 10 uploads less than BASE

Flag	BASE (f020eb1)	HEAD (35f179c)
	18	10
pytest-gpu-nvc-nvidiaX	1	0
pytest-gpu-aomp-amdgpuX	1	0

Additional details and impacted files

@@             Coverage Diff             @@
##             main    #2813       +/-   ##
===========================================
- Coverage   82.98%   45.08%   -37.90%     
===========================================
  Files         248      248               
  Lines       51012    50985       -27     
  Branches     4491     4474       -17     
===========================================
- Hits        42332    22987    -19345     
- Misses       7909    27038    +19129     
- Partials      771      960      +189     

Flag	Coverage Δ
pytest-gpu-aomp-amdgpuX	?
pytest-gpu-nvc-nvidiaX	?

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