misc: ruff manual changes part2

[JDBetteridge]

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Codecov Report

❌ Patch coverage is 77.49783% with 259 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.93%. Comparing base (f020eb1) to head (7f6c4df).

Files with missing lines	Patch %	Lines
devito/mpi/routines.py	13.55%	51 Missing ⚠️
devito/mpi/distributed.py	46.87%	17 Missing ⚠️
benchmarks/user/benchmark.py	46.66%	16 Missing ⚠️
devito/arch/compiler.py	50.00%	15 Missing and 1 partial ⚠️
devito/types/dense.py	75.00%	10 Missing ⚠️
devito/data/data.py	42.85%	8 Missing ⚠️
devito/tools/data_structures.py	50.00%	8 Missing ⚠️
devito/types/grid.py	75.75%	8 Missing ⚠️
devito/types/sparse.py	75.86%	7 Missing ⚠️
devito/ir/stree/tree.py	40.00%	6 Missing ⚠️
... and 55 more

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #2814      +/-   ##
==========================================
- Coverage   82.98%   78.93%   -4.06%     
==========================================
  Files         248      248              
  Lines       51012    50755     -257     
  Branches     4491     4393      -98     
==========================================
- Hits        42332    40061    -2271     
- Misses       7909     9890    +1981     
- Partials      771      804      +33     

Flag	Coverage Δ
pytest-gpu-aomp-amdgpuX	?
pytest-gpu-nvc-nvidiaX	?

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