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Down the rabbit hole we go
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Down the rabbit hole we go
44 followers · 29 following

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: Public SponsorAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: Public SponsorAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@spack @nf-core @catg-umag

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dialvarezs/README.md

Hey! I'm Diego

I'm a bioinformatician / software developer specialized in building Nextflow pipelines and doing data analysis in Python and R. I love automating things and creating nice visualizations and beautiful documents. I’m a strong advocate for open science and reproducible research.

When I'm not exploring genomic data, I'm probably doing some web development with Litestar/FastAPI and Vue/Nuxt, or tinkering with Linux systems.

Active contributor of the nf-core community, particularly maintaining the nf-core/mag pipeline.

GitHub Stats Top Languages

Techologies and tools I use

Skills

WebDev Skills

Stuff I love

  • Nextflow - Makes creating bioinformatics pipelines quick and enjoyable.
  • Typst - Modern alternative to LaTeX, faster and with better ergonomics.
  • Litestar - My go-to framework for building Python APIs.
  • Polars - Fast and modern DataFrame library that makes working with data a breeze.

Pinned Loading

  1. neat-cv neat-cv Public

    A modern and elegant CV template for Typst, inspired by Awesome CV and simple-hipstercv.

    Typst 31 12

  2. readfaker readfaker Public

    A fast Oxford Nanopore read simulator with realistic quality profiles

    Rust

  3. nf-core/mag nf-core/mag Public

    Assembly and binning of metagenomes

    Nextflow 264 144

  4. catg-umag/ont-basecalling-demultiplexing catg-umag/ont-basecalling-demultiplexing Public

    Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado

    Nextflow 2 2

  5. litestar-nuxt-fullstack litestar-nuxt-fullstack Public

    An example fullstack project using Litestar + Nuxt

    Python

  6. containers containers Public

    My container collection for using them in bioinformatics pipelines

    Dockerfile