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2 changes: 2 additions & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
@@ -1,2 +1,4 @@
^.*\.Rproj$
^\.Rproj\.user$
^\.positai$
^\.claude$
1 change: 1 addition & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -9,3 +9,4 @@ spell_check_results.tsv
.httr-oauth
docker/git_token.txt
.Rproj.user
.positai
10 changes: 9 additions & 1 deletion index.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -61,6 +61,14 @@ source("scripts/render_youtube_list.R")
knitr::kable(make_youtube_table("resources/youtube_demos_data.csv"), format = "html")
```

### AnVIL Workshops {-}

```{r, echo = FALSE, message = FALSE, warning = FALSE}
source("scripts/render_youtube_list.R")

knitr::kable(make_youtube_table("resources/youtube_workshop_data.csv"), format = "html")
```

### AnVIL WDL {-}

```{r, echo = FALSE, message = FALSE, warning = FALSE}
Expand All @@ -71,7 +79,7 @@ knitr::kable(make_youtube_table("resources/youtube_anvil_wdl_data.csv"), format

## GDSCN {-}

Check out the GDSCN YouTube channel: https://www.youtube.com/@genomicdatasciencecommunit2514
Check out the GDSCN YouTube channel: https://www.youtube.com/@genomicDScommunity

### SARS with Galaxy on AnVIL {-}

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2 changes: 2 additions & 0 deletions scripts/query_youtube.R
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,7 @@ shorts_playlist_id <- "PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio"
demos_playlist_id <- "PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E"
getting_started_playlist_id <- "PL6aYJ_0zJ4uD6SSVIuES9b79-00qvecHb"
wdl_playlist_id <- "PL6aYJ_0zJ4uB1dXNWtmisnX51hMSxrE_j"
virtual_workshops_id <- "PL6aYJ_0zJ4uBbLD-Yf5QOcQMMVY_XuftY"

gdscn_sars_playlist_id <- "PLzgm426KgvriINOUpgrBjTZXHIDZXOOz0"
gdscn_soil_project_playlist_id <- "PLzgm426KgvrhheloBdlSWshM9v2VvJEcX"
Expand Down Expand Up @@ -159,6 +160,7 @@ write_playlist_details(playlist_id = shorts_playlist_id, outfile = "youtube_shor
write_playlist_details(playlist_id = demos_playlist_id, outfile = "youtube_demos_data.csv")
write_playlist_details(playlist_id = getting_started_playlist_id, outfile = "youtube_getting_started_data.csv")
write_playlist_details(playlist_id = wdl_playlist_id, outfile = "youtube_anvil_wdl_data.csv")
write_playlist_details(playlist_id = virtual_workshops_id, outfile = "youtube_workshop_data.csv")

write_playlist_details(playlist_id = gdscn_sars_playlist_id, outfile = "youtube_gdscn_sars_data.csv")
write_playlist_details(playlist_id = gdscn_soil_project_playlist_id, outfile = "youtube_gdscn_soil_project_data.csv")
23 changes: 14 additions & 9 deletions scripts/render_youtube_list.R
Original file line number Diff line number Diff line change
Expand Up @@ -20,28 +20,33 @@ make_youtube_table <- function(infile) {

df <- df %>%
filter(status.privacyStatus == "public") %>% # Don't print unlisted videos
select(snippet.title, snippet.description, snippet.playlistId, snippet.resourceId.videoId)
select(snippet.title, contentDetails.videoPublishedAt, snippet.description, snippet.playlistId, snippet.resourceId.videoId)

# Create actual url of video
df <- df %>%
mutate(`Video` = paste0("[",snippet.title,"](https://www.youtube.com/watch?v=", snippet.resourceId.videoId, "&list=", snippet.playlistId, ")"))

# Create date posted
df <- df %>%
mutate(Date = format(contentDetails.videoPublishedAt, "%Y-%m-%d"))

# Extract slides link
df$`Google Slides` <-
df$Slides <-
df$snippet.description %>%
str_extract_all("https://docs.google.com/presentation/d/.*") %>%
str_extract_all("https://docs.google.com/presentation/d/.*|https://drive.google.com/file/d/.*") %>%
str_remove_all("\\.$") # Remove trailing period

# Create Google Slides link w/ markdown magic
df <- df %>%
mutate(`Google Slides` = paste0("[Go to slides](", `Google Slides`, ")")) %>%
select(Video, `Google Slides`) %>%
mutate(`Google Slides` = case_when(`Google Slides` == "[Go to slides](character(0))" ~ "N/A", # Often, there are no slides on the video description
`Google Slides` == "[Go to slides](NA)" ~ "N/A",
TRUE ~ `Google Slides`))
mutate(Slides = paste0("[Go to slides](", Slides, ")")) %>%
select(Video, Date, Slides) %>%
mutate(Slides = case_when(Slides == "[Go to slides](character(0))" ~ "N/A", # Often, there are no slides on the video description
Slides == "[Go to slides](NA)" ~ "N/A",
TRUE ~ Slides))

# Remove duplicates if necessary
df <- distinct(df)
df <- distinct(df) %>%
arrange(desc(Date))

return(df)
},
Expand Down
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