Skip to content

feat!: update amp/asco/cap 2017 models #46

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
korikuzma wants to merge 11 commits into
base: main
Choose a base branch
from
Draft

feat!: update amp/asco/cap 2017 models #46

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
dffcee5
feat!: update aac 2017 models
korikuzma Oct 27, 2025
a8c92dd
fixes
korikuzma Oct 27, 2025
d58457d
add typing_extensions
korikuzma Oct 27, 2025
584390d
fix
korikuzma Oct 27, 2025
1278ccb
renaming
korikuzma Oct 27, 2025
b873ae2
more rename
korikuzma Oct 27, 2025
e64fbf8
apply system + evidence line strength updates
korikuzma Oct 29, 2025
1c56c17
apply VariantClinicalSignificanceStatement + evidence line changes
korikuzma Nov 28, 2025
3a1c3c2
Merge branch 'main' into issue-42
korikuzma Feb 16, 2026
87d0024
fixes
korikuzma Feb 16, 2026
8225abe
fix copy/paste
korikuzma Feb 16, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion .gitmodules
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
[submodule "submodules/va_spec"]
path = submodules/va_spec
url = https://github.com/ga4gh/va-spec
branch = 1.0
branch = v1
3 changes: 2 additions & 1 deletion pyproject.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,8 @@ dynamic = ["version"]
dependencies = [
"ga4gh.vrs>=2.2.0,<3.0",
"ga4gh.cat_vrs~=0.7.1",
"pydantic>=2.0,<3.0"
"pydantic>=2.0,<3.0",
"typing_extensions",
]

[project.optional-dependencies]
Expand Down
38 changes: 24 additions & 14 deletions src/ga4gh/va_spec/aac_2017/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,21 +1,31 @@
"""Module to load and init namespace at package level."""

from .models import (
AMP_ASCO_CAP_LEVELS,
AMP_ASCO_CAP_TIERS,
Classification,
Strength,
VariantDiagnosticStudyStatement,
VariantPrognosticStudyStatement,
VariantTherapeuticResponseStudyStatement,
AMP_ASCO_CAP_CLASSIFICATION_CODES,
AMP_ASCO_CAP_CLASSIFICATION_MAP,
AMP_ASCO_CAP_EVIDENCE_LINE_STRENGTHS,
AmpAscoCapClassificationCode,
AmpAscoCapClassificationName,
AmpAscoCapEvidenceLine,
AmpAscoCapEvidenceLineStrength,
AsmpAscoCapStrengthCode,
DiagnosticEvidenceLine,
PrognosticEvidenceLine,
TherapeuticEvidenceLine,
VariantClinicalSignificanceStatement,
)

__all__ = [
"AMP_ASCO_CAP_LEVELS",
"AMP_ASCO_CAP_TIERS",
"Classification",
"Strength",
"VariantDiagnosticStudyStatement",
"VariantPrognosticStudyStatement",
"VariantTherapeuticResponseStudyStatement",
"AMP_ASCO_CAP_CLASSIFICATION_CODES",
"AMP_ASCO_CAP_CLASSIFICATION_MAP",
"AMP_ASCO_CAP_EVIDENCE_LINE_STRENGTHS",
"AmpAscoCapClassificationCode",
"AmpAscoCapClassificationName",
"AmpAscoCapEvidenceLine",
"AmpAscoCapEvidenceLineStrength",
"AsmpAscoCapStrengthCode",
"DiagnosticEvidenceLine",
"PrognosticEvidenceLine",
"TherapeuticEvidenceLine",
"VariantClinicalSignificanceStatement",
]
Loading