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To get COVID-19 mortality data on my own I did the following, not sure if its the most efficient way but it did work for me. I used some original R code from this GitHub page and added the variables for COVID I needed (found here: https://gis.cdc.gov/grasp/flu7/GetPhase07InitApp?appVersion=Public). I labeled each code chunk (this code was copied from the rmd file I used) with the R file name I used from this GitHub page (https://github.com/hrbrmstr/cdcfluview/tree/master/R) and you can find where I added the COVID variables on line 440 (also described in my comment on line 349). The last part of the rmd file includes some SQL code I added which formats a table to look like the CSV file downloaded from the CDC fluview interactive website: https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html For this to work, I think you need to load the cdcfluview package -> library(cdcfluview) If you could please try this and let me know it works for you that would be great.
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To get COVID-19 mortality data on my own I did the following, not sure if its the most efficient way but it did work for me.
I used some original R code from this GitHub page and added the variables for COVID I needed (found here: https://gis.cdc.gov/grasp/flu7/GetPhase07InitApp?appVersion=Public).
I labeled each code chunk (this code was copied from the rmd file I used) with the R file name I used from this GitHub page (https://github.com/hrbrmstr/cdcfluview/tree/master/R) and you can find where I added the COVID variables on line 440 (also described in my comment on line 349).
The last part of the rmd file includes some SQL code I added which formats a table to look like the CSV file downloaded from the CDC fluview interactive website: https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html
For this to work, I think you need to load the cdcfluview package -> library(cdcfluview)
If you could please try this and let me know it works for you that would be great.