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Bioc parallel#120

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jamespeapen wants to merge 29 commits intohuishenlab:masterfrom
jamespeapen:biocParallel
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Bioc parallel#120
jamespeapen wants to merge 29 commits intohuishenlab:masterfrom
jamespeapen:biocParallel

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Use BiocParallel for parallel operations.
Add some functions to correctly handle thread requests considering nested parallelism.
Fixes #105.

@jamespeapen jamespeapen added this to the v2 milestone Nov 24, 2025
@jamespeapen jamespeapen self-assigned this Nov 24, 2025
@jamespeapen jamespeapen added the enhancement New feature or request label Nov 24, 2025
to consolidate parallelizations args before using biocParallel
pollutes progress info with too many bars
Its only slower than parallel when group = TRUE
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Reduce/configure logging verbosity

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