Documentation/standardise theme

.github/workflows/R-CMD-check.yaml

@@ -4,7 +4,7 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
+  workflow_dispatch:
 
 name: R-CMD-check
 

.github/workflows/pkgdown.yaml

@@ -4,10 +4,9 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
+  workflow_dispatch:
   release:
     types: [published]
-  workflow_dispatch:
 
 name: pkgdown
 

.github/workflows/test-coverage.yaml

@@ -4,9 +4,11 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
+  workflow_dispatch:
+
+name: test-coverage.yaml
 
-name: test-coverage
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -15,36 +17,47 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          print(cov)
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v5
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          files: ./cobertura.xml
+          plugins: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package

README.Rmd

@@ -15,14 +15,9 @@ knitr::opts_chunk$set(
 
 # DisplayR
 
----
-
-<!-- badges: start -->
-[![R-CMD-check](https://github.com/jpcompartir/DisplayR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/jpcompartir/DisplayR/actions/workflows/R-CMD-check.yaml)
-[![pkgdown](https://github.com/jpcompartir/DisplayR/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/jpcompartir/DisplayR/actions/workflows/pkgdown.yaml)
-<!-- badges: end -->
+[![R-CMD-check](https://github.com/jpcompartir/DisplayR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/jpcompartir/DisplayR/actions/workflows/R-CMD-check.yaml) [![pkgdown](https://github.com/jpcompartir/DisplayR/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/jpcompartir/DisplayR/actions/workflows/pkgdown.yaml)
 
----
+------------------------------------------------------------------------
 
 DisplayR is SAMY Data Science's comprehensive package for data visualisation, offering a wide array of functions tailored to meet various data visualisation needs. This versatile package aims to improve data presentation and communication by providing visually engaging and informative graphics.
 
@@ -37,6 +32,6 @@ You can install the development version of DisplayR from [GitHub](https://github
 devtools::install_github("jpcompartir/DisplayR")
 ```
 
----
+------------------------------------------------------------------------
 
 <img src="man/figures/samy_banner.png" alt="SAMY Data Science" width="100%"/>

README.md

@@ -3,13 +3,8 @@
 
 # DisplayR
 
-------------------------------------------------------------------------
-
-<!-- badges: start -->
-
 [![R-CMD-check](https://github.com/jpcompartir/DisplayR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/jpcompartir/DisplayR/actions/workflows/R-CMD-check.yaml)
 [![pkgdown](https://github.com/jpcompartir/DisplayR/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/jpcompartir/DisplayR/actions/workflows/pkgdown.yaml)
-<!-- badges: end -->
 
 ------------------------------------------------------------------------