landlab · ChristinaB · Mar 8, 2018 · Mar 8, 2018 · Mar 8, 2018 · Mar 14, 2018
diff --git a/cyberinfrastructure_intro/Bandaragoda_HydroInformatics_2017.pdf b/cyberinfrastructure_intro/Bandaragoda_HydroInformatics_2017.pdf
diff --git a/cyberinfrastructure_intro/CUAHSIJupyterHub_plain_language_definitions.pdf b/cyberinfrastructure_intro/CUAHSIJupyterHub_plain_language_definitions.pdf
diff --git a/cyberinfrastructure_intro/DataModels_CloudComputing_GSA_2017.pdf b/cyberinfrastructure_intro/DataModels_CloudComputing_GSA_2017.pdf
diff --git a/ecohydrology_gridhydromet/Figures/CATGRassComponents.jpg b/ecohydrology_gridhydromet/Figures/CATGRassComponents.jpg
diff --git a/ecohydrology_gridhydromet/Figures/NewMexico_elevationbands.JPG b/ecohydrology_gridhydromet/Figures/NewMexico_elevationbands.JPG
diff --git a/ecohydrology_gridhydromet/figures/BiasCorrectionPlot.PNG b/ecohydrology_gridhydromet/figures/BiasCorrectionPlot.PNG
diff --git a/ecohydrology_gridhydromet/figures/CATGraSSFlowChart.jpeg b/ecohydrology_gridhydromet/figures/CATGraSSFlowChart.jpeg
diff --git a/ecohydrology_gridhydromet/figures/TableBiasCorrection.PNG b/ecohydrology_gridhydromet/figures/TableBiasCorrection.PNG
diff --git a/ecohydrology_gridhydromet/ogh_newmexico/NewMexico_highElevation.json b/ecohydrology_gridhydromet/ogh_newmexico/NewMexico_highElevation.json
diff --git a/ecohydrology_gridhydromet/ogh_newmexico/NewMexico_lowElevation.json b/ecohydrology_gridhydromet/ogh_newmexico/NewMexico_lowElevation.json
diff --git a/ecohydrology_gridhydromet/ogh_newmexico/NewMexico_midElevation.json b/ecohydrology_gridhydromet/ogh_newmexico/NewMexico_midElevation.json
diff --git a/ecohydrology_gridhydromet/ogh_newmexico/new_mexico_gridmet.csv b/ecohydrology_gridhydromet/ogh_newmexico/new_mexico_gridmet.csv
diff --git a/ecohydrology_gridhydromet/ogh_newmexico/observatory_gridmet_newmexico.ipynb b/ecohydrology_gridhydromet/ogh_newmexico/observatory_gridmet_newmexico.ipynb
diff --git a/ecohydrology_gridhydromet/reuse_ecohydrology_gridhydromet.ipynb b/ecohydrology_gridhydromet/reuse_ecohydrology_gridhydromet.ipynb
diff --git a/ecohydrology_gridhydromet/supporting_files/ecohyd_inputs.yaml b/ecohydrology_gridhydromet/supporting_files/ecohyd_inputs.yaml
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+### All inputs for Vegetation Cellular Automaton Model built on The Landlab
+### can be given here.
+### 14Feb2015 - Sai Nudurupati & Erkan Istanbulluoglu
+### 15Jul2016 - Updated to comply with Landlab Version 1 naming conventions.
+
+### Vegetation Cellular Automaton Model Input File:
+
+n_short: 6600 # Number of storms for short simulation that plots hydrologic parameters
+n_long_DEM: 1320 # Number of storms for long simulation that operates on single grid for sloped surface
+n_long_flat: 660000 # Number of storms for long simulation that operates on two grids - flat surface
+
+## Initial Plant Functional Types (PFT) distribution
+percent_bare_initial: 0.25 # Initial percentage of cells occupied by bare soil
+percent_grass_initial: 0.25 # Initial percentage of cells occupied by grass
+percent_shrub_initial: 0.25 # Initial percentage of cells occupied by shrubs
+percent_tree_initial: 0.25  # Initial percentage of cells occupied by trees
+
+## Precipitation:
+
+# Dry Season
+mean_storm_dry: 0.48 # Mean storm duration (hours)
+mean_interstorm_dry: 159.36 # Mean interstorm duration (hours)
+mean_storm_depth_dry: 3.07 # Mean storm depth (mm)
+
+# Wet Season
+mean_storm_wet: 0.46 # Mean storm duration (hours)
+mean_interstorm_wet: 84.24 # Mean interstorm duration (hours)
+mean_storm_depth_wet: 4.79 # Mean storm depth (mm)
+doy__start_of_monsoon: 182   # Day of the year when the monsoon starts
+doy__end_of_monsoon: 273 # Day of the year when the monsoon ends
+
+## PotentialEvapotranspiration:
+# Cosine Method
+PET_method: Cosine
+LT: 0 # Lag between peak TmaxF estimated by cosine method and solar forcing (days)
+DeltaD: 7. # Calibrated difference between
+ND: 365. # Number of days in the year (days)
+MeanTmaxF_grass: 4.96 # Mean annual rate of TmaxF (mm/d)
+MeanTmaxF_shrub: 3.77 # Mean annual rate of TmaxF (mm/d)
+MeanTmaxF_tree: 5.15 # Mean annual rate of TmaxF (mm/d)
+
+# TmaxF - Estimated maximum evapotranspiration as a function of DOY
+# using Penman Monteith method for historical weather
+
+## Soil Moisture:
+
+runon_switch: 0   # Whether to use runon or not
+f_bare: 0.7 # Fraction to partition PET for bare soil (None)
+
+# Grass
+
+VEGTYPE_grass: 0 # Integer value to infer Vegetation Type
+intercept_cap_grass: 0. # Full canopy interception capacity  (mm)
+zr_grass: 0.3 # Root depth (m)
+I_B_grass: 20. # Infiltration capacity of bare soil (mm/h)
+I_V_grass: 24. # Infiltration capacity of vegetated soil (mm/h)
+K_s_grass: 42. # Hydraulic conductivity (mm/h)
+pc_grass: 0.43 # Soil porosity (None)
+fc_grass: 0.56 # Soil saturation degree at field capacity (None)
+sc_grass: 0.33 # Soil saturation degree at stomatal closure (None)
+wp_grass: 0.13 # Soil saturation degree at wilting point (None)
+hgw_grass: 0.1 # Soil saturation degree at hygroscopic point (None)
+beta_grass: 13.8 # Deep percolation constant = 2*b+4  where b is water retention parameter
+
+# Shrub
+
+VEGTYPE_shrub: 1 # Integer value to infer Vegetation Type
+intercept_cap_shrub: 0. # Full canopy interception capacity  (mm)
+zr_shrub: 0.6 # Root depth (m)
+I_B_shrub: 20. # Infiltration capacity of bare soil (mm/h)
+I_V_shrub: 40. # Infiltration capacity of vegetated soil (mm/h)
+K_s_shrub: 42. # Hydraulic conductivity (mm/h)
+pc_shrub: 0.43 # Soil porosity (None)
+fc_shrub: 0.56 # Soil saturation degree at field capacity (None)
+sc_shrub: 0.33 # Soil saturation degree at stomatal closure (None)
+wp_shrub: 0.13 # Soil saturation degree at wilting point (None)
+hgw_shrub: 0.1 # Soil saturation degree at hygroscopic point (None)
+beta_shrub: 13.8 # Deep percolation constant = 2*b+4  where b is water retention parameter
+
+# Tree
+
+VEGTYPE_tree: 2 # Integer value to infer Vegetation Type
+intercept_cap_tree: 0. # Full canopy interception capacity  (mm)
+zr_tree: 1.3 # Root depth (m)
+I_B_tree: 20. # Infiltration capacity of bare soil (mm/h)
+I_V_tree: 40. # Infiltration capacity of vegetated soil (mm/h)
+K_s_tree: 42. # Hydraulic conductivity (mm/h)
+pc_tree: 0.43 # Soil porosity (None)
+fc_tree: 0.56 # Soil saturation degree at field capacity (None)
+sc_tree: 0.33 # Soil saturation degree at stomatal closure (None)
+wp_tree: 0.15 # Soil saturation degree at wilting point (None)
+hgw_tree: 0.1 # Soil saturation degree at hygroscopic point (None)
+beta_tree: 13.8 # Deep percolation constant = 2*b+4  where b is water retention parameter
+
+# Bare Soil
+
+VEGTYPE_bare: 3 # Integer value to infer Vegetation Type
+intercept_cap_bare: 0. # Full canopy interception capacity  (mm)
+zr_bare: 0.3 # Root depth (m)
+I_B_bare: 20. # Infiltration capacity of bare soil (mm/h)
+I_V_bare: 20. # Infiltration capacity of vegetated soil (mm/h)
+K_s_bare: 42. # Hydraulic conductivity (mm/h)
+pc_bare: 0.43 # Soil porosity (None)
+fc_bare: 0.56 # Soil saturation degree at field capacity (None)
+sc_bare: 0.33 # Soil saturation degree at stomatal closure (None)
+wp_bare: 0.13 # Soil saturation degree at wilting point (None)
+hgw_bare: 0.1 # Soil saturation degree at hygroscopic point (None)
+beta_bare: 13.8 # Deep percolation constant
+
+
+## Vegetation Dynamics:
+
+Blive_init: 102.
+Bdead_init: 450.
+PET_growth_threshold: 3.8 # PET threshold for growing season (mm/d)
+PET_dormancy_threshold: 6.8  # PET threshold for dormant season (mm/d)
+Tdmax: 10. # Constant for dead biomass loss adjustment (mm/d)
+w: 0.55 # Conversion factor of CO2 to dry biomass (Kg DM/Kg CO2)
+
+# Grass
+
+WUE_grass: 0.01 # Water use efficiency KgCO2Kg-1H2O
+cb_grass: 0.0047 # Specific leaf area for green/live biomass (m2 leaf g-1 DM)
+cd_grass: 0.009 # Specific leaf area for dead biomass (m2 leaf g-1 DM)
+ksg_grass: 0.012 # Senescence coefficient of green/live biomass (d-1)
+kdd_grass: 0.013 # Decay coefficient of aboveground dead biomass (d-1)
+kws_grass: 0.02 # Maximum drought induced foliage loss rate (d-1)
+LAI_max_grass: 2. # Maximum leaf area index (m2/m2)
+LAIR_max_grass: 2. # Reference leaf area index (m2/m2)
+
+# Shrub
+
+WUE_shrub: 0.0025 # Water use efficiency KgCO2Kg-1H2O
+cb_shrub: 0.004 # Specific leaf area for green/live biomass (m2 leaf g-1 DM)
+cd_shrub: 0.01 # Specific leaf area for dead biomass (m2 leaf g-1 DM)
+ksg_shrub: 0.002 # Senescence coefficient of green/live biomass (d-1)
+kdd_shrub: 0.013 # Decay coefficient of aboveground dead biomass (d-1)
+kws_shrub: 0.02 # Maximum drought induced foliage loss rate (d-1)
+LAI_max_shrub: 2. # Maximum leaf area index (m2/m2)
+LAIR_max_shrub: 2. # Reference leaf area index (m2/m2)
+
+# Tree
+
+WUE_tree: 0.0045 # Water use efficiency KgCO2Kg-1H2O
+cb_tree: 0.004 # Specific leaf area for green/live biomass (m2 leaf g-1 DM)
+cd_tree: 0.01 # Specific leaf area for dead biomass (m2 leaf g-1 DM)
+ksg_tree: 0.002 # Senescence coefficient of green/live biomass (d-1)
+kdd_tree: 0.013 # Decay coefficient of aboveground dead biomass (d-1)
+kws_tree: 0.01 # Maximum drought induced foliage loss rate (d-1)
+LAI_max_tree: 4. # Maximum leaf area index (m2/m2)
+LAIR_max_tree: 4. # Reference leaf area index (m2/m2)
+
+# Bare
+
+WUE_bare: 0.0001 # Water use efficiency KgCO2Kg-1H2O
+cb_bare: 0.0047 # Specific leaf area for green/live biomass (m2 leaf g-1 DM)
+cd_bare: 0.009 # Specific leaf area for dead biomass (m2 leaf g-1 DM)
+ksg_bare: 0.012 # Senescence coefficient of green/live biomass (d-1)
+kdd_bare: 0.013 # Decay coefficient of aboveground dead biomass (d-1)
+kws_bare: 0.02 # Maximum drought induced foliage loss rate (d-1)
+LAI_max_bare: 0.01 # Maximum leaf area index (m2/m2)
+LAIR_max_bare: 0.01 # Reference leaf area index (m2/m2)
+
+
+## Cellular Automaton Vegetation:
+
+# Grass
+
+Pemaxg: 0.35 # Maximal establishment probability
+ING: 2 # Parameter to define allelopathic effect on grass from cresotebush
+ThetaGrass: 0.65 # Drought resistant threshold
+PmbGrass: 0.05               # Background mortality probability
+
+# Shrub
+
+Pemaxsh: 0.16 # Maximal establishment probability
+ThetaShrub: 0.76 # Drought resistant threshold
+PmbShrub: 0.01 # Background mortality probability
+tpmaxShrub: 600 # Maximum age (yr)
+
+# Tree
+
+Pemaxtr: 0.21 # Maximal establishment probability
+ThetaTree: 0.71 # Drought resistant threshold
+PmbTree: 0.011 # Background mortality probability
+tpmaxTree: 350 # Maximum age (yr)
+
+# ShrubSeedling
+
+ThetaShrubSeedling: 0.63 # Drought resistant threshold
+PmbShrubSeedling: 0.03 # Background mortality probability
+tpmaxShrubSeedling: 18 # Maximum age (yr)
+
+# TreeSeedling
+
+ThetaTreeSeedling: 0.6 # Drought resistant threshold
+PmbTreeSeedling: 0.03 # Background mortality probability
+tpmaxTreeSeedling: 20 # Maximum age (yr)