Simulations - Projection imaging#537
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Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…o be examined Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Codecov Report❌ Patch coverage is
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## main #537 +/- ##
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+ Coverage 46.59% 51.83% +5.23%
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Files 51 62 +11
Lines 10460 10430 -30
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+ Hits 4874 5406 +532
+ Misses 5586 5024 -562 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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Move the 5 CLI pipeline scripts (forward simulation, reconstruction, sweeps, visualization) to waveorder-dev/projection_modeling/. Leave behind a self-contained Jupytext demo that generates the [o] line phantom, applies fluorescence and phase blur, projects at oblique angles, and reconstructs via CG-Tikhonov. Uses jupyter_visuals.plot_multicolumn for non-blocking visualization. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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@talonchandler I've reorganized the code and tested. Ready for review and merging. The reports and pngs are moved to |
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This is the first of 3 planned PRs for:
This PR contributes:
The next two PRs should address:
In this PR:
Simulations are done with 1D object (0.5 um bead), 2D object (Biohub logo [o]), and 3D object (microscopic Shepp-Logan Phantom).
See the results of analysis in this report.
@talonchandler let's think about how to organize the simulations in the codebase. Does a simulations module exist? Please refactor while you test.