Upgrade

[aarmey]

No description provided.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 91.45%. Comparing base (1c21486) to head (131555a).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #42   +/-   ##
=======================================
  Coverage   91.45%   91.45%           
=======================================
  Files          10       10           
  Lines         433      433           
=======================================
  Hits          396      396           
  Misses         37       37           

Flag	Coverage Δ
unittests	91.45% <ø> (ø)

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[Copilot]

Pull Request Overview

This PR upgrades the project's dependencies and migrates the build tooling from Rye to uv. The project version is bumped to 0.2.0, and the minimum Python version requirement is raised to 3.12.

• Migration from Rye to uv for package management and task execution
• Version bumps for core dependencies (scipy, cupy-cuda12x, anndata, pytest)
• Updated CI workflow to use uv and remove Python version matrix testing

Reviewed Changes

Copilot reviewed 3 out of 4 changed files in this pull request and generated no comments.

File	Description
pyproject.toml	Updated project version, Python requirement, dependency versions, and migrated from Rye to standard dependency-groups
makefile	Replaced all rye run commands with uv run and updated sync command
.github/workflows/test.yml	Migrated CI from Rye setup to uv setup and removed Python version matrix

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