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MokaGuys

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  1. seglh-cnv seglh-cnv Public

    Scripts and docker images to run CNV pipelines

    R 3 1

  2. dnanexus_swiss_army_SNP_bcftools_filter dnanexus_swiss_army_SNP_bcftools_filter Public

    This repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks

    Shell 2

  3. automate_demultiplex automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    Python 1 2

  4. dnanexus_happy dnanexus_happy Public

    DNAnexus app comparing a query VCF to a truth VCF to calculate performance metrics including sensitivity and precision using hap.py and vcfeval

    Shell 1

  5. fhprs fhprs Public

    FH Polygenic risk score

    Python 1

  6. dnanexus_ED_cnv_calling dnanexus_ED_cnv_calling Public

    Performs CNV calling using ExomeDepth.

    Shell 1

Repositories

Showing 10 of 197 repositories
  • mokabed Public

    Generates BED files

    moka-guys/mokabed’s past year of commit activity
    Python 0 0 13 31 Updated Jan 8, 2026
  • dnanexus_verifybamid Public

    DNAnexus app which runs verifyBamID to detect sample contamination from population allele frequencies

    moka-guys/dnanexus_verifybamid’s past year of commit activity
    Shell 0 2 0 0 Updated Jan 8, 2026
  • dnanexus_peddy Public

    DNAnexus app running peddy v0.4.8 (https://github.com/brentp/peddy) to perform a run wide QC check that the assigned gender matches the sample

    moka-guys/dnanexus_peddy’s past year of commit activity
    Shell 0 0 3 1 Updated Jan 6, 2026
  • moka-guys/gstt_primer_design’s past year of commit activity
    0 MIT 0 0 1 Updated Jan 6, 2026
  • automate_demultiplex Public

    Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics

    moka-guys/automate_demultiplex’s past year of commit activity
    Python 1 2 17 2 Updated Jan 5, 2026
  • samplesheet_validator Public

    A package to validate the formatting of Illumina SampleSheets and which notifies the user of any issues

    moka-guys/samplesheet_validator’s past year of commit activity
    Python 0 0 2 0 Updated Jan 5, 2026
  • seglh-naming Public

    SEGLH naming schemes

    moka-guys/seglh-naming’s past year of commit activity
    Python 1 Apache-2.0 1 2 0 Updated Jan 2, 2026
  • dnanexus_duty_csv Public

    DNAnexus implementation of duty_csv. To be used in conjunction with process_duty_csv

    moka-guys/dnanexus_duty_csv’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 10, 2025
  • integrity_checking Public

    Script to display a message box on the sequencers, with the goal of ensuring data is not lost should the data integrity check fail

    moka-guys/integrity_checking’s past year of commit activity
    Python 0 0 3 1 Updated Dec 10, 2025
  • duty_csv Public

    Generates a CSV file containing DNAnexus download links for end of run processing. To be used in conjunction with process_duty_csv

    moka-guys/duty_csv’s past year of commit activity
    Python 0 0 3 0 Updated Dec 10, 2025

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