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Bug fix #235 #239

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1ce81a7
.gitignore. Ignore generated files in local build
nrizzo Jul 14, 2026
d1a7d0d
fixed bug mummer (issue #235)
nrizzo Jul 14, 2026
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63 changes: 63 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -16,3 +16,66 @@ compile
test-driver
compile_commands.json
.deps
Makefile
libtool
mummer.pc
stamp-h1
*.o
*.lo
.libs
annotate
combineMUMs
delta-filter
delta2vcf
dnadiff
exact-tandems
libumdmummer.la
mgaps
mummer
mummerplot
nucmer
nucmer_ori
postnuc
postpro
prenuc
prepro
promer
repeat-match
show-aligns
show-coords
show-diff
show-snps
show-tiling
*.dirstamp
src/umd/nucmer_cmdline.hpp
*.log
*.trs
tests/batch
tests/check_LCP
tests/check_LCP_cmdline.hpp
tests/check_cigar
tests/check_cigar_cmdline.hpp
tests/data/
tests/generate_sequences
tests/generate_sequences_cmdline.hpp
tests/genome/
tests/sam/
tests/save_load/
tests/testsh
tests/ufasta
tests/ufasta_src/dsort_cmdline.hpp
tests/ufasta_src/extract_cmdline.hpp
tests/ufasta_src/format_cmdline.hpp
tests/ufasta_src/head_cmdline.hpp
tests/ufasta_src/n50_cmdline.hpp
tests/ufasta_src/one_cmdline.hpp
tests/ufasta_src/rc_cmdline.hpp
tests/ufasta_src/rsort_cmdline.hpp
tests/ufasta_src/sizes_cmdline.hpp
tests/ufasta_src/sort_cmdline.hpp
tests/ufasta_src/split_cmdline.hpp
tests/ufasta_src/tail_cmdline.hpp
unittests/libgtest.la
unittests/libgtest_main.la
unittests/test_all
unittests/tmp/
2 changes: 1 addition & 1 deletion include/mummer/sparseSA.hpp
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Expand Up @@ -653,7 +653,7 @@ void sparseSA::findMEM_k_each(const char* P, size_t Plen, long k, int min_len, b
int i = 0;
bool succes = true;
while(i < sparseMult && (succes = suffixlink(mli))){
suffixlink(xmi);
if( !suffixlink(xmi) ){ xmi = mli; }
i++;
}
if(!succes){
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