Skip to content
Draft
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file added data/nextstrain/MPXV/ancestral/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/MPXV/ancestral/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,10 @@
"valueFriendly": "Reconstructed ancestral MPXV"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/ebola/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/ebola/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,10 @@
"valueFriendly": "UNKNOWN"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/enterovirus/d68/image.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/enterovirus/d68/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,10 @@
"valueFriendly": "UNKNOWN"
}
},
"image": {
"path": "image.jpg",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/flu_h1n1pdm_ha/CY121680/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/flu_h1n1pdm_ha/CY121680/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,10 @@
"valueFriendly": "A/California/07/2009"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/flu_h1n1pdm_ha/MW626062/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/flu_h1n1pdm_ha/MW626062/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,10 @@
"valueFriendly": "A/Wisconsin/588/2019"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/flu_h1n1pdm_na/MW626056/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/flu_h1n1pdm_na/MW626056/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,10 @@
"valueFriendly": "A/Wisconsin/588/2019"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/flu_h3n2_ha/CY163680/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/flu_h3n2_ha/CY163680/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,10 @@
"valueFriendly": "A/Wisconsin/67/2005"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/flu_h3n2_ha/EPI1857216/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/flu_h3n2_ha/EPI1857216/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,10 @@
"valueFriendly": "A/Darwin/6/2021"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/flu_h3n2_na/EPI1857215/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/flu_h3n2_na/EPI1857215/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,10 @@
"valueFriendly": "A/Darwin/6/2021"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/hMPXV/NC_063383.1/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/hMPXV/NC_063383.1/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,10 @@
"valueFriendly": "MPXV-M5312_HM12_Rivers"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/hMPXV_B1/pseudo_ON563414/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,10 @@
"valueFriendly": "MPXV_USA_2022_MA001 in NC_063383 coordinates"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/rsv_a/EPI_ISL_412866/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/rsv_a/EPI_ISL_412866/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,10 @@
"valueFriendly": "hRSV/A/England/397/2017"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/rsv_b/EPI_ISL_1653999/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/rsv_b/EPI_ISL_1653999/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,10 @@
"valueFriendly": "hRSV/B/Australia/VIC-RCH056/2019 "
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data/nextstrain/sars-cov-2-21L/BA.2/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/sars-cov-2-21L/BA.2/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,10 @@
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"defaultGene": "S",
"deprecated": false,
"enabled": true,
Expand Down
Binary file added data/nextstrain/sars-cov-2/MN908947/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/sars-cov-2/MN908947/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,10 @@
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"defaultGene": "S",
"deprecated": false,
"enabled": true,
Expand Down
Binary file added data/nextstrain/zika/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data/nextstrain/zika/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,10 @@
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"deprecated": false,
"experimental": true,
"files": {
Expand Down
64 changes: 64 additions & 0 deletions data_output/index.json
Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,10 @@
"valueFriendly": "Wuhan-Hu-1/2019"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -95,6 +99,10 @@
"valueFriendly": "BA.2"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -151,6 +159,10 @@
"valueFriendly": "Reconstructed ancestral MPXV"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -202,6 +214,10 @@
"valueFriendly": "MPXV-M5312_HM12_Rivers"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -254,6 +270,10 @@
"valueFriendly": "MPXV_USA_2022_MA001 in NC_063383 coordinates"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -309,6 +329,10 @@
"valueFriendly": "hRSV/A/England/397/2017"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -359,6 +383,10 @@
"valueFriendly": "hRSV/B/Australia/VIC-RCH056/2019 "
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -409,6 +437,10 @@
"valueFriendly": "A/California/07/2009"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -462,6 +494,10 @@
"valueFriendly": "A/Wisconsin/588/2019"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -515,6 +551,10 @@
"valueFriendly": "A/Wisconsin/588/2019"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -568,6 +608,10 @@
"valueFriendly": "A/Wisconsin/67/2005"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -621,6 +665,10 @@
"valueFriendly": "A/Darwin/6/2021"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -675,6 +723,10 @@
"valueFriendly": "A/Darwin/6/2021"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -1431,6 +1483,10 @@
"valueFriendly": "UNKNOWN"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -1472,6 +1528,10 @@
"valueFriendly": "UNKNOWN"
}
},
"image": {
"path": "image.jpg",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down Expand Up @@ -2695,6 +2755,10 @@
"valueFriendly": "UNKNOWN"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"files": {
"changelog": "CHANGELOG.md",
"examples": "sequences.fasta",
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,10 @@
"valueFriendly": "Reconstructed ancestral MPXV"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Binary file added data_output/nextstrain/ebola/unreleased/image.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 4 additions & 0 deletions data_output/nextstrain/ebola/unreleased/pathogen.json
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,10 @@
"valueFriendly": "UNKNOWN"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,10 @@
"valueFriendly": "UNKNOWN"
}
},
"image": {
"path": "image.jpg",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,10 @@
"valueFriendly": "A/California/07/2009"
}
},
"image": {
"path": "image.png",
"source": "nextstrain.org"
},
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading