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nf-cmgg / preprocessing Public

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Chore/bump modules#142

Merged

matthdsm merged 29 commits intodevnf-cmgg/preprocessing:devfrom

chore/bump_modulesnf-cmgg/preprocessing:chore/bump_modulesCopy head branch name to clipboard

Dec 2, 2025

Conversation Commits29 (29)Checks Files changed

Merged

Chore/bump modules#142
matthdsm merged 29 commits intodevfrom
chore/bump_modules

Commits

Commits on Dec 2, 2025

bump bcl2fastq/bclconvert and subworkflow
matthdsm
committed
bump bamsormadup
matthdsm
committed
bump aligners, add strobealign
matthdsm
committed
clean up subwf
matthdsm
committed
bump nf-schema
matthdsm
committed
bump fastp
matthdsm
committed
ditch fastqc
matthdsm
committed
bump md5sum
matthdsm
committed
bump mosdepth
matthdsm
committed
bump multiqc
matthdsm
committed
bump picard modules
matthdsm
committed
bump samtools modules
matthdsm
committed
fix snap config
matthdsm
committed
update ro-crate
matthdsm
committed
fix files-unchanged
matthdsm
committed
patch modules
matthdsm
committed
re-add analysis profiles
matthdsm
committed
set cram output to v3 to ensure downstream compatibility
matthdsm
committed
bump subwf
matthdsm
committed
fix snapshots
matthdsm
committed
drop githubworkflow since we have no bot
matthdsm
committed
fix test
matthdsm
committed
try to fix bclconvert on GCP
matthdsm
committed
update bcl-convert config for gcp
matthdsm
committed
add dynamic disk allocation
matthdsm
committed
increase mem
matthdsm
committed
fix linting
matthdsm
committed
fix module config
matthdsm
committed
Merge branch 'dev' into chore/bump_modules
matthdsm
authored

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