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[Do not merge!] Pseudo PR for first release #5

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mashehu wants to merge 635 commits into
TEMPLATEfrom
dev
Open

[Do not merge!] Pseudo PR for first release #5
mashehu wants to merge 635 commits into
TEMPLATEfrom
dev

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@mashehu

@mashehu mashehu commented Nov 16, 2024

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Do not merge! This is a PR of dev compared to the TEMPLATE branch for whole-pipeline reviewing purposes. Changes should be made to dev and this PR should not be merged into first-commit-for-pseudo-pr!

@nf-core-bot

nf-core-bot commented Dec 13, 2024

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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.5.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

stvdsomp and others added 25 commits December 17, 2025 17:20
a
added hificnv module to pacvar.nf
nextflow_schema.json# Please enter the commit message for your changes. Lines starting
PBCPGTOOLS_ALIGNEDBAMTOCPGSCORES
chaochaowong and others added 30 commits May 22, 2026 14:43
Add fibertools-rs for m6A calling (if BAM has kinetic signatures) and nucleosome positioning (if BAN already has m6A tags).
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7 participants