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Pull requests: nf-core/tools

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Pull requests list

Lock file maintenance
#4257 opened May 1, 2026 by renovate Bot Loading…
1 task
1
Update dependency textual to v8.2.5
#4256 opened May 1, 2026 by renovate Bot Loading…
1 task
1
Fix edam comments
#4242 opened Apr 28, 2026 by LouisLeNezet Contributor Loading…
4 tasks
@LouisLeNezet
18
Fix: Issue #4173 awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again. awaiting-feedback
#4174 opened Apr 4, 2026 by sonusonukgupta-gif Loading…
1
Request org details to fill in more template fields
#4146 opened Mar 29, 2026 by muffato Member • Draft
4 tasks
4.1.0
@muffato
12
Bump requests from 2.32.5 to 2.33.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4136 opened Mar 26, 2026 by dependabot Bot Loading…
1
Bump pyjwt from 2.10.1 to 2.12.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4120 opened Mar 14, 2026 by dependabot Bot Loading…
1
added "auto process" screen and extracted labels/names from nf
#4117 opened Mar 13, 2026 by imkhoibui Loading…
4 tasks
1
template: workflow output for multiQC
#4093 opened Mar 6, 2026 by maxulysse Member Loading…
4 tasks
5.0.0
4
Fix incompatible Docker Daemon Version in Devcontainer
#4029 opened Feb 4, 2026 by JulianFlesch Contributor • Draft
4 tasks
1
TEMPLATE: Add bioconda channel to conda setup
#3987 opened Jan 19, 2026 by maxulysse Member Loading…
4 tasks
4
Escape original merge branch to compile regex
#3984 opened Jan 16, 2026 by rrahn Contributor Loading…
3 of 4 tasks
1
added helpful comment for common gotcha - prefix scoping
#3982 opened Jan 15, 2026 by ammaraziz Loading…
1 of 2 tasks
1
Implement wave container commands
#3954 opened Dec 2, 2025 by JulianFlesch Contributor • Draft
4 tasks done
4.1.0
@ningyuxin1999
40
Configbuilder: nf-core configs create
#3949 opened Dec 1, 2025 by mirpedrol Member Loading…
1
1
Pipeline template: New pre-commit hooks (large files, merge conflicts)
#3935 opened Nov 26, 2025 by MatthiasZepper Member Loading…
2 of 4 tasks
4.1.0
18
simplify TEMPLATE with nf-core-utils 0.4.0
#3870 opened Nov 4, 2025 by maxulysse Member Loading…
4 tasks
4
Migrate template to nf-core-utils plugin
#3790 opened Oct 1, 2025 by edmundmiller Contributor • Draft
4 tasks
@adamrtalbot
15
Testing out Reftrace for regex replacement in modules
#3745 opened Sep 2, 2025 by ningyuxin1999 Contributor • Draft
4 tasks
3.5.0
@ningyuxin1999
5
Tests cleanup
#3733 opened Aug 27, 2025 by edmundmiller Contributor • Draft
2
@edmundmiller
15
Patch patch command
#3714 opened Aug 15, 2025 by ErikDanielsson Contributor Loading…
2 of 4 tasks
@ErikDanielsson
5
Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller Contributor Loading…
4 tasks
@edmundmiller
27
Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels Member • Draft
2 of 4 tasks
1
@ewels
11
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Contributor Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps Contributor • Draft
4 tasks
11
ProTip! Exclude everything labeled bug with -label:bug.