Adaptation of brainreg for Get Your Brain Straight hackathon

A package to support the following contribution: https://github.com/InsightSoftwareConsortium/GetYourBrainStraight/tree/main/HCK01_2022_Virtual/ReproducibleResource/IanaVasylieva

• Free software: BSD license

This package uses brainreg open-source image registration software: https://github.com/brainglobe/brainreg

Installation (standalone)

conda create -y -n brainreg python=3.8
conda activate brainreg
git clone https://github.com/noisysky/GYBS_hackathon.git
cd GYBS_hackathon
pip install -r requirements.txt

Usage (standalone)

gybs -i /path/to/input_img.nii.gz -o /path/to/output_folder -v 10 10 10 --orientation sla

refer to brainreg documentation: https://docs.brainglobe.info/brainreg/tutorial

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.