Skip to content

Merge in Min's Branch #2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
dontminchenit wants to merge 4 commits into
base: main
Choose a base branch
from
Open

Merge in Min's Branch #2

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
5ed8992
separate R and Windows scripts
dontminchenit Aug 27, 2024
c0c55a0
Merge branch 'ntustison:main' into main
dontminchenit Aug 27, 2024
5c35e7c
Reverted Nick's previous stich script
dontminchenit Aug 27, 2024
517c484
Merge branch 'main' of https://github.com/dontminchenit/ANTsXMouseBra…
dontminchenit Aug 27, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions Manuscript/stitch.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -24,11 +24,11 @@ for( i in 1:length( rmdFiles ) )
cat( rmdFiles[i] )
if( i == 1 )
{
cmd <- paste( "type", rmdFiles[i], ">", stitchedFile )
cmd <- paste( "cat", rmdFiles[i], ">", stitchedFile )
} else {
cmd <- paste( "type", rmdFiles[i], ">>", stitchedFile )
cmd <- paste( "cat", rmdFiles[i], ">>", stitchedFile )
}
shell( cmd )
system( cmd )
}

cat( '\n Pandoc rendering', stitchedFile, '\n' )
Expand Down
37 changes: 37 additions & 0 deletions Manuscript/stitch_win.R
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,37 @@
library( rmarkdown )
library( ggplot2 )

stitchedFile <- "stitched.md"

rmdFiles <- c( "format.md",
"titlePage.md",
"abstract.md",
"intro.md",
"introAnts.md",
"resultsAllen.md",
"resultsDevCCF.md",
"resultsKK.md",
"discussion.md",
"methods.md",
"data_availability.md",
"acknowledgments.md",
"author_contributions.md",
"references.md"
)

for( i in 1:length( rmdFiles ) )
{
cat( rmdFiles[i] )
if( i == 1 )
{
cmd <- paste( "type", rmdFiles[i], ">", stitchedFile )
} else {
cmd <- paste( "type", rmdFiles[i], ">>", stitchedFile )
}
shell( cmd )
}

cat( '\n Pandoc rendering', stitchedFile, '\n' )
render( stitchedFile, pdf_document( number_sections = TRUE, pandoc_args = "--variable=subparagraph" ) )
render( stitchedFile, latex_document() )