omero fields optional #87
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| { | ||
| "ome": { | ||
| "version": "0.6.dev3", | ||
| "multiscales": [ | ||
| { | ||
| "coordinateSystems": [ | ||
| { | ||
| "name": "physical", | ||
| "axes": [ | ||
| { | ||
| "name": "z", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| }, | ||
| { | ||
| "name": "y", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| }, | ||
| { | ||
| "name": "x", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "datasets": [ | ||
| { | ||
| "path": "s0", | ||
| "coordinateTransformations": [ | ||
| { | ||
| "scale": [ | ||
| 1, | ||
| 1, | ||
| 1 | ||
| ], | ||
| "input": "s0", | ||
| "output": "physical", | ||
| "type": "scale" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "omero": { | ||
| } | ||
| }, | ||
| "_conformance": { | ||
| "schema": { | ||
| "id": "schemas/image.schema" | ||
| }, | ||
| "valid": false | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,94 @@ | ||
| { | ||
| "ome": { | ||
| "version": "0.6.dev3", | ||
| "multiscales": [ | ||
| { | ||
| "coordinateSystems": [ | ||
| { | ||
| "name": "physical", | ||
| "axes": [ | ||
| { | ||
| "name": "z", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| }, | ||
| { | ||
| "name": "y", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| }, | ||
| { | ||
| "name": "x", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "datasets": [ | ||
| { | ||
| "path": "s0", | ||
| "coordinateTransformations": [ | ||
| { | ||
| "scale": [ | ||
| 1, | ||
| 1, | ||
| 1 | ||
| ], | ||
| "input": "s0", | ||
| "output": "physical", | ||
| "type": "scale" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "omero": { | ||
| "channels": [ | ||
| { | ||
| "label": "Channel:0", | ||
| "color": "#ff0000", | ||
| "active": true, | ||
| "family": "linear", | ||
| "coefficient": 1.0, | ||
| "inverted": false, | ||
| "window": { | ||
| "min": 0, | ||
| "max": 255 | ||
| } | ||
| }, | ||
| { | ||
| "label": "Channel:1", | ||
| "color": "#00ff00", | ||
| "active": true, | ||
| "family": "log", | ||
|
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||
| "coefficient": 0.5, | ||
| "inverted": true, | ||
| "window": { | ||
| "min": 0, | ||
| "max": 255 | ||
| } | ||
| }, | ||
| { | ||
| "label": "Channel:2", | ||
| "color": "#0000ff", | ||
| "active": true, | ||
| "family": "gamma", | ||
|
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There was a problem hiding this comment. that does not exist as a mapping family |
||
| "coefficient": 2.0, | ||
| "inverted": false, | ||
| "window": { | ||
| "min": 0, | ||
| "max": 255 | ||
| } | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| "_conformance": { | ||
| "schema": { | ||
| "id": "schemas/image.schema" | ||
| }, | ||
| "valid": false | ||
| } | ||
| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,99 @@ | ||
| { | ||
| "ome": { | ||
| "version": "0.6.dev3", | ||
| "multiscales": [ | ||
| { | ||
| "coordinateSystems": [ | ||
| { | ||
| "name": "physical", | ||
| "axes": [ | ||
| { | ||
| "name": "z", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| }, | ||
| { | ||
| "name": "y", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| }, | ||
| { | ||
| "name": "x", | ||
| "type": "space", | ||
| "unit": "micrometer" | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "datasets": [ | ||
| { | ||
| "path": "s0", | ||
| "coordinateTransformations": [ | ||
| { | ||
| "scale": [ | ||
| 1, | ||
| 1, | ||
| 1 | ||
| ], | ||
| "input": "s0", | ||
| "output": "physical", | ||
| "type": "scale" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| ], | ||
| "omero": { | ||
| "channels": [ | ||
| { | ||
| "label": "Channel:0", | ||
| "color": "#ff0000", | ||
|
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||
| "active": true, | ||
| "family": "linear", | ||
| "coefficient": 1.0, | ||
| "inverted": false, | ||
| "window": { | ||
| "min": 0, | ||
| "start": 100, | ||
| "end": 200, | ||
| "max": 255 | ||
| } | ||
| }, | ||
| { | ||
| "label": "Channel:1", | ||
| "color": "#00ff00", | ||
| "active": true, | ||
| "family": "log", | ||
|
|
||
| "coefficient": 0.5, | ||
| "inverted": true, | ||
| "window": { | ||
| "min": 0, | ||
| "start": 50, | ||
| "end": 150, | ||
| "max": 255 | ||
| } | ||
| }, | ||
| { | ||
| "label": "Channel:2", | ||
| "color": "#0000ff", | ||
| "active": true, | ||
| "family": "gamma", | ||
|
|
||
| "coefficient": 2.0, | ||
| "inverted": false, | ||
| "window": { | ||
| "min": 0, | ||
| "start": 25, | ||
| "end": 125, | ||
| "max": 255 | ||
| } | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| "_conformance": { | ||
| "schema": { | ||
| "id": "schemas/image.schema" | ||
| } | ||
| } | ||
| } | ||
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this is not correct
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we have in the omero rnd: linear, logarithmic, exponential and polynomial.
I believe what you refer as "gamma" will be polynomial.
I would avoid the divergence that we already have at the
modellevel (see comment below)There was a problem hiding this comment.
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I think this originates from a PR of mine to this one. I didn't find these terms (i.e., "family" precisely defined anywhere), so I kept it vague. Would be nice to have this clearly mapped out somewhere, i.e., here :)