Repositories list

• mutsel-rate-manuscript

  Public
  Python

  •0•1•0•0•Updated Sep 3, 2025Sep 3, 2025

• evodock

  Public
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking

  Python

  •8•29•4•0•Updated Jul 5, 2025Jul 5, 2025

• cloudcontactscore

  Public
  Fast score function for coarse grained protein docking

  Python

  •0•1•0•0•Updated Mar 21, 2025Mar 21, 2025

• rosetta

  Public
  The Rosetta Bio-macromolecule modeling package.

  C++

  •

  Other

  •140•0•0•0•Updated Mar 8, 2025Mar 8, 2025

• symmetryhandler

  Public
  Simple utility library to deal with symmetry files in Rosetta and visualizing them in Rosetta

  Perl

  •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• cubicsym

  Public
  Tools for using cubic symmetry with Rosetta

  Python

  •1•1•0•0•Updated Feb 27, 2025Feb 27, 2025

• zernike_ligand

  Public
  HTML

  •1•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• site-rate-averaging

  Public
  Python

  •0•0•0•0•Updated May 7, 2024May 7, 2024

• RosettaEvolve

  Public
  Python

  •0•4•0•0•Updated Apr 29, 2024Apr 29, 2024

• vera-masters

  Public
  Code used in Vera Karlin's master thesis project

  Jupyter Notebook

  •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

• af_cubic_docking

  Public
  0•1•0•0•Updated Jun 29, 2023Jun 29, 2023

• DnaK_paper

  Public
  0•0•0•0•Updated Jun 10, 2022Jun 10, 2022

• DnaK_response_manuscript

  Public
  0•0•0•0•Updated Oct 20, 2021Oct 20, 2021

• ZEAL_web

  Public
  ZEAL version 2 optimized for web server deployment

  JavaScript

  •2•2•0•0•Updated Apr 20, 2021Apr 20, 2021

• ZEAL

  Public
  Software to perform shape-based protein structure alignment.

  4•8•0•0•Updated Mar 25, 2021Mar 25, 2021

• ZEAL_v1

  Public
  ZErnike-based protein shape ALignment

  JavaScript

  •1•4•0•0•Updated Mar 2, 2021Mar 2, 2021

• ZEAL_commandLine

  Public
  Command-line interface for ZEAL

  structural-biologyprotein-structurestructural-bioinformatics+ 5zernike-polynomials3d-shape-matching3d-zernikezernike-canterakismolecular-shape

  MATLAB

  •2•4•2•0•Updated Feb 22, 2021Feb 22, 2021

• bioce_webserver

  Public
  Webserver for bioce

  Python

  •

  Other

  •1•0•11•0•Updated Jan 11, 2021Jan 11, 2021

• coronoscopy

  Public
  GNU General Public License v3.0

  •2•0•0•0•Updated Dec 4, 2020Dec 4, 2020

• TMS

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Dec 1, 2020Dec 1, 2020

• bioce

  Public
  bayesian inference of conformational ensembles

  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Sep 4, 2020Sep 4, 2020

• hbv_trSAXS

  Public
  Data set and models from analyzing time-resolved SAXS data of Hepatitis B virus

  0•0•0•0•Updated Aug 27, 2020Aug 27, 2020

• python_training

  Public
  Jupyter Notebook

  •2•0•0•0•Updated Feb 11, 2020Feb 11, 2020

• sas_tools

  Public
  Simple SAXS/SANS utilities for processing data and visualisation

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Dec 18, 2018Dec 18, 2018