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    • Python
      0000Updated Apr 9, 2026Apr 9, 2026
    • plotter

      Public
      Visualization tool to plot composites at reference points & regions of interest
      JavaScript
      02232Updated Apr 7, 2026Apr 7, 2026
    • pegr-ngs_pipeline

      Public archive
      Python
      MIT License
      0100Updated Mar 5, 2026Mar 5, 2026
    • genomics toolbox that supports both graphical and command-line execution
      Java
      MIT License
      615473Updated Mar 4, 2026Mar 4, 2026
    • CLAMP

      Public
      Clustered Alignment of Motif Profiles
      Python
      0000Updated Feb 23, 2026Feb 23, 2026
    • website and documentation for scriptmanager
      JavaScript
      MIT License
      0081Updated Feb 22, 2026Feb 22, 2026
    • PughLab's Infrastructure and Software setup guides
      JavaScript
      0200Updated Feb 20, 2026Feb 20, 2026
    • Shell
      0000Updated Feb 10, 2026Feb 10, 2026
    • Pugh Lab Website at Cornell.
      HTML
      0100Updated Feb 3, 2026Feb 3, 2026
    • BX methods paper
      Shell
      MIT License
      0001Updated Jan 5, 2026Jan 5, 2026
    • Shell
      0000Updated Aug 18, 2025Aug 18, 2025
    • Ansible playbook to install galaxy
      Jinja
      0000Updated Aug 14, 2025Aug 14, 2025
    • MIT License
      0000Updated Jun 25, 2025Jun 25, 2025
    • A high-resolution protein architecture of the budding yeast genome
      Rich Text Format
      MIT License
      2410Updated May 7, 2025May 7, 2025
    • Python
      0000Updated Dec 20, 2024Dec 20, 2024
    • Analysis for methods and protocol paper
      Shell
      0000Updated Nov 20, 2024Nov 20, 2024
    • 20XX-LastName_Journal

      Public template
      The template repo for future publication-associated repositories
      Shell
      0100Updated Nov 4, 2024Nov 4, 2024
    • stencil

      Public
      A web templating engine for visualizing and sharing life science datasets
      JavaScript
      MIT License
      28011Updated Oct 29, 2024Oct 29, 2024
    • GenoPipe

      Public
      Toolkit for characterizing the genotype of NGS datasets
      Shell
      MIT License
      1410Updated Sep 30, 2024Sep 30, 2024
    • Jupyter Notebook
      0000Updated Aug 23, 2024Aug 23, 2024
    • website and documentation for GenoPipe
      JavaScript
      0000Updated Mar 4, 2024Mar 4, 2024
    • Python
      MIT License
      0100Updated Dec 1, 2023Dec 1, 2023
    • Shell
      0000Updated Sep 26, 2023Sep 26, 2023
    • Shell
      0000Updated Oct 29, 2022Oct 29, 2022
    • Simplified ChIP-exo and ChIP-seq assays
      0210Updated Aug 26, 2022Aug 26, 2022
    • Genome-wide determinants of sequence-specific DNA binding of general regulatory factors
      1200Updated Aug 26, 2022Aug 26, 2022
    • MIT License
      0000Updated Aug 26, 2022Aug 26, 2022
    • 0000Updated Aug 26, 2022Aug 26, 2022
    • 0000Updated Aug 26, 2022Aug 26, 2022
    • HTML
      0000Updated Aug 26, 2022Aug 26, 2022
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