Repositories list

• 2024_Li_GRN_inference

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• plotter

  Public
  Visualization tool to plot composites at reference points & regions of interest

  visualizationbioinformatics

  visualizationbioinformatics

  JavaScript

  •00 forks•22 stars•2323 issues•22 pull requests•Updated Apr 7, 2026Apr 7, 2026

• pegr-ngs_pipeline

  Public archive
  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 5, 2026Mar 5, 2026

• scriptmanager

  Public
  genomics toolbox that supports both graphical and command-line execution

  bioinformaticsngs-analysis

  bioinformaticsngs-analysis

  Java

  •

  MIT License

  •66 forks•1515 stars•4747 issues•33 pull requests•Updated Mar 4, 2026Mar 4, 2026

• CLAMP

  Public
  Clustered Alignment of Motif Profiles

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2026Feb 23, 2026

• scriptmanager-docs

  Public
  website and documentation for scriptmanager

  JavaScript

  •

  MIT License

  •00 forks•00 stars•88 issues•11 pull request•Updated Feb 22, 2026Feb 22, 2026

• labtutorial

  Public
  PughLab's Infrastructure and Software setup guides

  JavaScript

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• TSS-PIC-Nuc

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2026Feb 10, 2026

• cegrcode.github.io

  Public
  Pugh Lab Website at Cornell.

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 3, 2026Feb 3, 2026

• NucleosomePhasing

  Public
  BX methods paper

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•11 pull request•Updated Jan 5, 2026Jan 5, 2026

• Gallego_2025

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 18, 2025Aug 18, 2025

• Galaxy_Install_Ansible

  Public archive
  Ansible playbook to install galaxy

  Jinja

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 14, 2025Aug 14, 2025

• yep-trackhub

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 25, 2025Jun 25, 2025

• 2021-Rossi_Nature

  Public
  A high-resolution protein architecture of the budding yeast genome

  Rich Text Format

  •

  MIT License

  •22 forks•44 stars•11 issue•00 pull requests•Updated May 7, 2025May 7, 2025

• ControlledAtlasPipeline_Fall2024

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 20, 2024Dec 20, 2024

• 2023-Krebs_BenzonaseSeq

  Public
  Analysis for methods and protocol paper

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 20, 2024Nov 20, 2024

• 20XX-LastName_Journal

  Public template
  The template repo for future publication-associated repositories

  Shell

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 4, 2024Nov 4, 2024

• stencil

  Public
  A web templating engine for visualizing and sharing life science datasets

  nodejsdockerbioinformatics+ 4

  nodejsdockerbioinformaticsreactjsstencilwebappbioinformatics-tool

  JavaScript

  •

  MIT License

  •22 forks•88 stars•00 issues•1111 pull requests•Updated Oct 29, 2024Oct 29, 2024

• GenoPipe

  Public
  Toolkit for characterizing the genotype of NGS datasets

  Shell

  •

  MIT License

  •11 fork•44 stars•11 issue•00 pull requests•Updated Sep 30, 2024Sep 30, 2024

• 2024-Louder_Cell

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 23, 2024Aug 23, 2024

• GenoPipe-docs

  Public
  website and documentation for GenoPipe

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 4, 2024Mar 4, 2024

• pegr-galaxy_tools

  Public
  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 1, 2023Dec 1, 2023

• 2023-Breugel_JournalXXXX

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2023Sep 26, 2023

• 2022-Mittal_SAGA

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 29, 2022Oct 29, 2022

• 2018-Rossi_NatureCommunications

  Public
  Simplified ChIP-exo and ChIP-seq assays

  00 forks•22 stars•11 issue•00 pull requests•Updated Aug 26, 2022Aug 26, 2022

• 2018-Rossi_GenomeResearch

  Public
  Genome-wide determinants of sequence-specific DNA binding of general regulatory factors

  11 fork•22 stars•00 issues•00 pull requests•Updated Aug 26, 2022Aug 26, 2022

• 2021-Lai_PCRP

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2022Aug 26, 2022

• Mittal_2021_ChEC-seq

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2022Aug 26, 2022

• 2020-Badjatia_peroxide_stress

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2022Aug 26, 2022

• 2022_EColi_John-Jabbar

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2022Aug 26, 2022