Repositories list

• Mesquite-Zephyr

  Public
  Zephyr is a package for connecting Mesquite to other phylogenetic inference software

  Java

  •2•1•0•1•Updated Jan 5, 2026Jan 5, 2026

• MesquiteCore

  Public
  The core Mesquite repository

  Java

  •

  GNU Lesser General Public License v3.0

  •28•109•36•7•Updated Jan 4, 2026Jan 4, 2026

• Cartographer

  Public
  Java

  •0•0•1•0•Updated Dec 29, 2025Dec 29, 2025

• Mesquite_PDAP

  Public
  The PDAP:PDTREE package for Mesquite

  Java

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Nov 3, 2025Nov 3, 2025

• Chromaseq

  Public
  A package for processing chromatograms and making base calls

  Java

  •

  GNU Lesser General Public License v3.0

  •2•6•1•0•Updated Oct 25, 2025Oct 25, 2025

• NINJA_Mesquite

  Public
  Java

  •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

• MacClade

  Public
  MacClade 4: Analysis of phylogeny and character evolution

  OpenEdge ABL

  •

  GNU Lesser General Public License v2.1

  •0•4•1•0•Updated May 5, 2025May 5, 2025

• TreeSetVis

  Public
  Java

  •0•1•0•0•Updated Feb 23, 2025Feb 23, 2025

• web-scripts

  Public
  Web scripts for server

  1•0•0•0•Updated May 7, 2018May 7, 2018

• MesquiteDeveloperDocumentation

  Public
  0•0•0•0•Updated May 2, 2018May 2, 2018

• StratigraphicTools

  Public
  Laurin et al.'s stratigraphic tool modules for Mesquite

  Java

  •0•1•0•0•Updated Sep 12, 2017Sep 12, 2017

• sotol

  Public
  0•0•0•0•Updated May 6, 2017May 6, 2017

• MesquiteJavaDocs

  Public
  0•0•0•0•Updated Jul 7, 2016Jul 7, 2016

• Opal_Mesquite

  Public
  Java

  •0•0•0•0•Updated Jul 14, 2014Jul 14, 2014

• MesquiteExamples

  Public
  Example modules for extending Mesquite

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Dec 5, 2013Dec 5, 2013

• MesquiteArchive

  Public
  Archive of the Subversion repository as of December 4, 2013

  Java

  •

  GNU Lesser General Public License v3.0

  •1•2•0•0•Updated Dec 5, 2013Dec 5, 2013