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@ProteinDesignLab Protein Design Lab

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    13 repositories

    • caliby

      Public
      Potts model-based protein sequence design
      Python
      •
      Apache License 2.0
      •13•82•0•0•Updated Feb 19, 2026Feb 19, 2026

    • 3DRNA

      Public
      Python
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • protpardelle-1c

      Public
      Updated Protpardelle models with more robust motif scaffolding and multichain support
      Python
      •
      MIT License
      •12•68•2•0•Updated Dec 15, 2025Dec 15, 2025

    • protpardelle

      Public
      Diffusion-based all-atom protein generative model.
      Python
      •
      MIT License
      •20•232•4•0•Updated Aug 27, 2025Aug 27, 2025

    • protein_shapes

      Public
      Metrics to evaluate distributional coverage of generative models of protein structures.
      Python
      •
      MIT License
      •4•19•1•1•Updated Aug 13, 2025Aug 13, 2025

    • protein_seq_des

      Public
      Code for our paper "Protein sequence design with a learned potential"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•82•0•0•Updated Sep 8, 2023Sep 8, 2023

    • protein-design-tutorials

      Public
      Tutorials, cheat sheets, and other resources for computational methods for protein design.
      Jupyter Notebook
      •28•132•0•0•Updated Aug 15, 2023Aug 15, 2023

    • IgVAE

      Public
      A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•32•0•0•Updated Jul 25, 2022Jul 25, 2022

    • IgFold

      Public
      Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
      Python
      •
      Other
      •70•0•0•0•Updated May 4, 2022May 4, 2022

    • ColabFold

      Public
      Making Protein folding accessible to all via Google Colab!
      Jupyter Notebook
      •
      MIT License
      •694•0•0•0•Updated Aug 7, 2021Aug 7, 2021

    • visualize_violations

      Public
      Script for visualizing wrong/violated predictions in PyMol
      Python
      •1•3•0•0•Updated Jun 14, 2020Jun 14, 2020

    • pdb-tools

      Public
      Set of utility scripts to manipulate PDB files
      Python
      •
      Other
      •121•4•0•0•Updated Feb 19, 2018Feb 19, 2018

    • BetaBarrelBuilder

      Public
      GUI for building beta barrels and exporting the resulting PDB
      Java
      •1•0•0•0•Updated Dec 28, 2017Dec 28, 2017