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@Strong-Lab Strong Lab, National Jewish Health, University of Colorado, Denver

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    11 repositories

    • extract_sequence_range

      Public
      A script that provides several options for extracting a range of characters from a FASTA file
      Python
      •1•0•0•0•Updated May 18, 2022May 18, 2022

    • Viral_Classification_in_Metagenomics

      Public
      This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools
      machine-learningmetagenomicsviral
      machine-learningmetagenomicsviralphageviral-metagenomics
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Dec 7, 2021Dec 7, 2021

    • GISAID_Pipeline_Functions

      Public
      Scripts used to determine variants in SARS-CoV-2 Sequences from the Global Sharing of All Influenza Data (GISAID) database.
      Python
      •1•0•0•0•Updated Nov 21, 2021Nov 21, 2021

    • Phybrid

      Public
      A hybrid gene content and k-mer feature viral metagenomic contig identifier
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Jun 3, 2021Jun 3, 2021

    • Prophage_in_NTM

      Public
      This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial ge…
      virulence-factorntmmycobacterium
      virulence-factorntmmycobacteriumprophageprophagesintegrated-prophages
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Dec 16, 2020Dec 16, 2020

    • VirBrant

      Public
      Jupyter Notebook
      •
      MIT License
      •2•3•0•0•Updated Dec 12, 2020Dec 12, 2020

    • VirKraken

      Public
      Kraken extension to identify viral contigs
      Python
      •
      MIT License
      •1•10•2•0•Updated Dec 4, 2020Dec 4, 2020

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.9k•0•0•0•Updated Sep 30, 2020Sep 30, 2020

    • wiki

      Public
      How to's
      0•0•0•0•Updated May 29, 2020May 29, 2020

    • NTM_Soil

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 6, 2020Apr 6, 2020

    • public

      Public
      0•0•0•0•Updated Jan 18, 2019Jan 18, 2019
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