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the pangenome graph builder
Shell 471 45
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
C++ 228 43
implicit pangenome graph
Rust 86 10
linearize and simplify variation graphs using blocked partial order alignment
C++ 59 8
simple interface for all-way alignment with biWFA
plane sweep filtering genome alignments
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GFA visualization tool - Rust reimplementation of odgi viz
fastga rust library
A toolkit for exploring regions of variation in a variation graph
Rust library and CLI for sorting bidirected pangenome graphs using configurable pipelines (path-guided SGD, grooming, topological sort)
alignment to variation graph inducer
pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2
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