Find(), ConstFind() dictionary methods, .gitignore#89
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douglasgscofield wants to merge 14 commits intopezmaster31:masterfrom
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Find(), ConstFind() dictionary methods, .gitignore#89douglasgscofield wants to merge 14 commits intopezmaster31:masterfrom
douglasgscofield wants to merge 14 commits intopezmaster31:masterfrom
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Also DOS-to-Unixify BamReader.h endlines and remove an extra set of parens in bamtools.cpp
Also initiate README.md for this fork
…onary With my addition of BamReader::GetConstSamHeader(), the operator[] method for querying SamSequenceDictionary no longer worked as it couldn't handle a const this. Since it had a default not-found behavior of adding the query name, I think these Find() iterator-based methods, as parallels to the find() methods of map containers are better with read-only access. The End() iterator is returned if sequenceName is not found.
Conflicts: CMakeLists.txt src/api/BamReader.h
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For SamSequenceDictionary, adds a Find(), Find() const, and equivalent ConstFind() method to return iterators into the sequence dictionary.
Also adds a .gitignore, feel free to ignore that...