Overview

Welcome to the Centre for Population Genomics! We're glad to have you here :)

This repository contains documentation you might find useful as you onboard and as an ongoing reference. We sometimes let these docs fall out of date, so please have a chat on Slack if something seems unclear - or open a pull request!

If you need help more urgently, don't hesitate to ask directly on Slack (e.g. in the #team-data or #software-questions channels).

• Getting started
• Setup:
  • Getting started
  • Setting up your terminal
  • Setting up certificates from ZScaler
  • Git + Github
  • Python
  • Setting up code editors
  • Notebooks
  • Hail query and Hail Batch
• About the centre
  • Reproducible analyses
  • Storage policies
• Guides:
  • Notebooks
  • Setting up a new repository
  • R style guide
  • cpg-utils config guide
  • Budgets
  • Docker images