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regenerate monarch_context.jsonld #22

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21 changes: 13 additions & 8 deletions registry/monarch_context.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -25,15 +25,15 @@
"CoriellCollection": "https://catalog.coriell.org/1/",
"CoriellFamily": "https://catalog.coriell.org/0/Sections/BrowseCatalog/FamilyTypeSubDetail.aspx?fam=",
"CoriellIndividual": "https://catalog.coriell.org/Search?q=",
"DATA": "http://edamontology.org/data_",
"DC_CL": "http://purl.obolibrary.org/obo/DC_CL",
"DECIPHER": "http://purl.obolibrary.org/obo/DECIPHER_",
"DOI": "http://dx.doi.org/",
"DOID": "http://purl.obolibrary.org/obo/DOID_",
"DrugBank": "http://www.drugbank.ca/drugs/",
"EC": "http://www.enzyme-database.org/query.php?ec=",
"ECO": "http://purl.obolibrary.org/obo/ECO_",
"EFO": "http://purl.obolibrary.org/obo/EFO_",
"EDAM-DATA": "http://edamontology.org/data_",
"EFO": "http://www.ebi.ac.uk/efo/EFO_",
"EMAPA": "http://purl.obolibrary.org/obo/EMAPA_",
"EMMA": "https://www.infrafrontier.eu/search?keyword=EM:",
"ENSEMBL": "http://ensembl.org/id/",
Expand All @@ -51,6 +51,7 @@
"GO": "http://purl.obolibrary.org/obo/GO_",
"GO_REF": "http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:",
"GenBank": "http://www.ncbi.nlm.nih.gov/nuccore/",
"Genatlas": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=",
"GeneReviews": "http://www.ncbi.nlm.nih.gov/books/",
"HGMD": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=",
"HGNC": "http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=",
Expand All @@ -67,6 +68,7 @@
"ISBN": "https://monarchinitiative.org/ISBN_",
"ISBN-10": "https://monarchinitiative.org/ISBN10_",
"ISBN-13": "https://monarchinitiative.org/ISBN13_",
"IUPHAR": "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=",
"J": "http://www.informatics.jax.org/reference/J:",
"JAX": "http://jaxmice.jax.org/strain/",
"KEGG-ds": "http://purl.obolibrary.org/KEGG-ds_",
Expand All @@ -88,11 +90,11 @@
"MPD-strain": "http://phenome.jax.org/db/q?rtn=strains/details&strainid=",
"MUGEN": "http://bioit.fleming.gr/mugen/Controller?workflow=ViewModel&expand_all=true&name_begins=model.block&eid=",
"MedGen": "http://www.ncbi.nlm.nih.gov/medgen/",
"MonarchArchive": "https://archive.monarchinitiative.org/201806/",
"MonarchArchive": "https://archive.monarchinitiative.org/201901/",
"MonarchData": "https://data.monarchinitiative.org/ttl/",
"NBO": "http://purl.obolibrary.org/obo/NBO_",
"NCBIAssembly": "http://www.ncbi.nlm.nih.gov/assembly/",
"NCBIGene": "http://www.ncbi.nlm.nih.gov/gene/",
"NCBIGene": "https://www.ncbi.nlm.nih.gov/gene/",
"NCBIGenome": "http://www.ncbi.nlm.nih.gov/genome/",
"NCBIProtein": "http://www.ncbi.nlm.nih.gov/protein/",
"NCBITaxon": "http://purl.obolibrary.org/obo/NCBITaxon_",
Expand All @@ -103,11 +105,10 @@
"OBAN": "http://purl.org/oban/",
"OBI": "http://purl.obolibrary.org/obo/OBI_",
"OBO": "http://purl.obolibrary.org/obo/",
"OIO": "http://www.geneontology.org/formats/oboInOwl#",
"OMIA": "http://purl.obolibrary.org/obo/OMIA_",
"OMIA-breed": "https://monarchinitiative.org/model/OMIA-breed:",
"OMIM": "http://purl.obolibrary.org/obo/OMIM_",
"Orphanet": "http://www.orpha.net/ORDO/Orphanet_",
"OMIM": "http://omim.org/entry/",
"ORPHA": "http://www.orpha.net/ORDO/Orphanet_",
"PAINT_REF": "http://www.geneontology.org/gene-associations/submission/paint/",
"PANTHER": "http://www.pantherdb.org/panther/family.do?clsAccession=",
"PATO": "http://purl.obolibrary.org/obo/PATO_",
Expand Down Expand Up @@ -138,11 +139,13 @@
"TrEMBL": "http://purl.uniprot.org/uniprot/",
"UBERON": "http://purl.obolibrary.org/obo/UBERON_",
"UCSC": "ftp://hgdownload.cse.ucsc.edu/goldenPath/",
"UCSCBuild": "http://genome.ucsc.edu/cgi-bin/hgGateway?db=",
"UMLS": "http://linkedlifedata.com/resource/umls/id/",
"UNII": "http://fdasis.nlm.nih.gov/srs/unii/",
"UO": "http://purl.obolibrary.org/obo/UO_",
"UPHENO": "http://purl.obolibrary.org/obo/UPHENO_",
"UniProtKB": "http://identifiers.org/uniprot/",
"VGNC": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/",
"VIVO": "http://vivoweb.org/ontology/core#",
"VT": "http://purl.obolibrary.org/obo/VT_",
"WBPhenotype": "http://purl.obolibrary.org/obo/WBPhenotype_",
Expand All @@ -158,7 +161,7 @@
"ZFS": "http://purl.obolibrary.org/obo/ZFS_",
"ZP": "http://purl.obolibrary.org/obo/ZP_",
"catfishQTL": "https://www.animalgenome.org/cgi-bin/QTLdb/IP/qdetails?QTL_ID=",
"cattleQTL": "https://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_D=",
"cattleQTL": "https://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=",
"chickenQTL": "https://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=",
"dbSNP": "http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=",
"dbSNPIndividual": "http://www.ncbi.nlm.nih.gov/SNP/snp_ind.cgi?ind_id=",
Expand All @@ -171,6 +174,8 @@
"faldo": "http://biohackathon.org/resource/faldo#",
"foaf": "http://xmlns.com/foaf/0.1/",
"horseQTL": "https://www.animalgenome.org/cgi-bin/QTLdb/EC/qdetails?QTL_ID=",
"miRBase": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=",
"oboInOwl": "http://www.geneontology.org/formats/oboInOwl#",
"owl": "http://www.w3.org/2002/07/owl#",
"pav": "http://purl.org/pav/",
"pigQTL": "https://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=",
Expand Down