Update scipy to 1.17.0

[jan-janssen]

Summary by CodeRabbit

• Chores
  • Updated SciPy dependency version to 1.17.0 across all environments and configuration files.

_{✏️ Tip: You can customize this high-level summary in your review settings.}

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📝 Walkthrough

Walkthrough

This pull request updates the SciPy dependency version from 1.16.3 to 1.17.0 across four configuration files used for continuous integration, Binder environments, and package installation specifications.

Changes

Cohort / File(s)	Change Summary
SciPy Version Bump .ci_support/environment-docs.yml, .ci_support/environment.yml, binder/environment.yml, pyproject.toml	Updates SciPy from 1.16.3 to 1.17.0 across all environment and dependency configuration files

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• Update scipy to 1.16.2 #553: Updates scipy dependency version in the same set of configuration files
• Update scipy to 1.16.3 #579: Previous scipy version bump (1.16.2→1.16.3) in the same files that this PR follows up on
• Update scipy to 1.15.1 #389: Updates scipy version entries across the same environment and manifest files

Suggested labels

dependencies

Poem

🐰 A hop, a skip, through version land,
SciPy's bumped by my swift hand,
From 1.16.3 to 1.17.0 we bound,
Consistent updates all around! ✨

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title 'Update scipy to 1.17.0' clearly and directly describes the main change across all modified files, which are consistent scipy version updates from 1.16.3 to 1.17.0 in environment and dependency configuration files.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch scipy

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[jan-janssen]

Wait for pyiron/structuretoolkit#449

[coderabbitai]

Actionable comments posted: 1

🤖 Fix all issues with AI agents

In `@pyproject.toml`:
- Around line 27-32: The pyproject dependency pin "scipy==1.17.0" in the
dependencies list is incompatible with the declared Python support (3.9–3.10);
either change the project metadata python_requires to require Python >=3.11
(update python_requires in pyproject.toml) or downgrade the SciPy pin to a
release that supports 3.9/3.10 (e.g., replace "scipy==1.17.0" with a
1.10.x/1.9.x version) so the "dependencies" list and python_requires are
consistent.

[coderabbitai]

⚠️ Potential issue | 🔴 Critical

🧩 Analysis chain

🌐 Web query:

scipy 1.17.0 PyPI release supported python versions

💡 Result:

SciPy 1.17.0 on PyPI supports Python 3.11, 3.12, 3.13, and 3.14 (PyPI metadata: Requires-Python: >=3.11; classifiers list 3.11–3.14; wheels are published for cp311–cp314). [1]

---

🌐 Web query:

scipy 1.17.0 numpy compatibility requirements

💡 Result:

SciPy 1.17.0 requires NumPy 1.26.4 or newer (i.e., numpy>=1.26.4). [1][2]

---

SciPy 1.17.0 requires Python ≥3.11, incompatible with declared Python 3.9–3.10 support.

SciPy 1.17.0 drops support for Python 3.9 and 3.10 (requires Python ≥3.11). The project claims to support Python 3.9–3.14, making this dependency unpinnable for Python 3.9 and 3.10. Either update the minimum Python version to 3.11 in project metadata or downgrade SciPy to a version supporting Python 3.9+. NumPy 2.3.5 is compatible with SciPy 1.17.0.

🤖 Prompt for AI Agents

In `@pyproject.toml` around lines 27 - 32, The pyproject dependency pin
"scipy==1.17.0" in the dependencies list is incompatible with the declared
Python support (3.9–3.10); either change the project metadata python_requires to
require Python >=3.11 (update python_requires in pyproject.toml) or downgrade
the SciPy pin to a release that supports 3.9/3.10 (e.g., replace "scipy==1.17.0"
with a 1.10.x/1.9.x version) so the "dependencies" list and python_requires are
consistent.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 86.81%. Comparing base (597357c) to head (99cec38).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #618   +/-   ##
=======================================
  Coverage   86.81%   86.81%           
=======================================
  Files          43       43           
  Lines        2419     2419           
=======================================
  Hits         2100     2100           
  Misses        319      319           

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