AstroSpace

Generative modeling of astrocyte branching morphology with Space Colonization Algorithm (by Runions 2007)

Dependencies

Warning

Python 3.11 is mandatory!

Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
.ipynb_checkpoints		.ipynb_checkpoints
__pycache__		__pycache__
tmd results		tmd results
.DS_Store		.DS_Store
01112024 SpaceColonization.ipynb		01112024 SpaceColonization.ipynb
05052023 SpaceColonization_orig_3D.ipynb		05052023 SpaceColonization_orig_3D.ipynb
05052023 SpaceColonization_synupd_3D.ipynb		05052023 SpaceColonization_synupd_3D.ipynb
1wk-both5-red-raw.swc		1wk-both5-red-raw.swc
1wk-ly27.swc		1wk-ly27.swc
4wk-both7-grn-raw.swc		4wk-both7-grn-raw.swc
4wk-ly16-raw.swc		4wk-ly16-raw.swc
4wk-ly9-raw.swc		4wk-ly9-raw.swc
Analysis.ipynb		Analysis.ipynb
LICENSE		LICENSE
README.md		README.md
S5_1_3_sholl.txt		S5_1_3_sholl.txt
SCA.py		SCA.py
Tutorial.ipynb		Tutorial.ipynb
astro_graph.py		astro_graph.py
astrobject.py		astrobject.py
diagram_FMM.png		diagram_FMM.png
morphofeatures_S5_1_3.csv		morphofeatures_S5_1_3.csv
morphofeatures_S5_1_3.h5		morphofeatures_S5_1_3.h5
morphofeatures_test.csv		morphofeatures_test.csv
morphofeatures_test.h5		morphofeatures_test.h5
morphofeatures_tree3d-wsoma.csv		morphofeatures_tree3d-wsoma.csv
morphofeatures_tree3d-wsoma.h5		morphofeatures_tree3d-wsoma.h5
new_tree3d-wsoma.swc		new_tree3d-wsoma.swc
point_cloud.py		point_cloud.py
requirements.txt		requirements.txt
test_sholl.txt		test_sholl.txt
tree3d-wsoma.swc		tree3d-wsoma.swc
tree3d-wsoma_sholl.txt		tree3d-wsoma_sholl.txt
tree3d.swc		tree3d.swc
utils.py		utils.py