docs: update gget repo and manual URLs from pachterlab to scverse (#217)#219
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docs: update gget repo and manual URLs from pachterlab to scverse (#217)#219Elarwei001 wants to merge 1 commit into
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Updates references to the gget repository and documentation site from `pachterlab` to `scverse` (github.com/scverse/gget, scverse.org/gget), reflecting the project's move under the scverse organization. Links to separate resources (pachterlab/gget_examples, pachterlab/kvar, pachterlab/varseek, and the Pachter Lab homepage) are left unchanged. The auto-generated Spanish docs (docs/src/es/) are not edited. Resolves scverse#217 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Summary
Resolves #217. Updates
ggetrepository and documentation-site URLs across the docs, README, and code frompachterlabtoscverse, reflecting the project's move under the scverse organization.What changed (40 files)
github.com/pachterlab/gget→github.com/scverse/gget— view-source links, badges, figures,git clonecommands, issue/PR/discussions/network links, andraw.githubusercontent.comasset URLs.pachterlab.github.io/gget→scverse.org/gget— the Manual and cite links in the README (scverse.org/ggetis this repo's official homepage).updates.mdremain valid after the org change.Deliberately NOT changed
pachterlab/gget_examples,pachterlab/kvar,pachterlab/varseek.pachterlab.github.io/.docs/src/es/) — regenerated by the translation workflow, per CONTRIBUTING.Notes for maintainer review
dependents.mdhad its embedded URL updated to scverse for consistency — happy to revert that one line if you'd rather keep the quoted original.scverse.org/gget/en/cite.html); please confirm that page resolves.discussionslinks now point to scverse, but discussions appear disabled on both repos — a separate matter, not addressed here.