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Why Does Machine Learning Fail for Small-Molecule Mass Spectrometry?

This repository contains the code, analysis, and evaluation pipelines used for benchmarking machine learning models for small-molecule mass spectrometry tasks.


Data

All datasets used in this project will be made available via Google Drive.

You can access the data here:

https://drive.google.com/drive/folders/1v11lTwFSdlSRJ6ETLHqkbT809Ji9w0OY?usp=drive_link

The folder contains the processed datasets and intermediate files required to reproduce the experiments reported in the paper.

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Analysis of current fingerprint prediction models for small-molecule mass spectrometry

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