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Clean up imports and standardize how code accesses resources within project directory

Status: Open.

#95 In sheynkman-lab/biosurfer;

· jsaquing opened on Nov 16, 2021

Wiki for Biosurfer Project

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#94 In sheynkman-lab/biosurfer;

· gsheynkman opened on Nov 14, 2021

Behavior of linking Nucleotides to Residues is possibly counterintuitive

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

Status: Open.

#92 In sheynkman-lab/biosurfer;

· jsaquing opened on Nov 4, 2021

Abstract data structure to handle relationships among parent and children

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

postponedThis should be handled in the future, but is low priority right nowThis should be handled in the future, but is low priority right now

Status: Open.

#91 In sheynkman-lab/biosurfer;

· jsaquing opened on Oct 13, 2021

How to better organize different data sources

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

enhancementNew feature or requestNew feature or request

postponedThis should be handled in the future, but is low priority right nowThis should be handled in the future, but is low priority right now

Status: Open.

#90 In sheynkman-lab/biosurfer;

· jsaquing opened on Oct 12, 2021

Reference database initialization

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

enhancementNew feature or requestNew feature or request

postponedThis should be handled in the future, but is low priority right nowThis should be handled in the future, but is low priority right now

Status: Open.

#89 In sheynkman-lab/biosurfer;

· jsaquing opened on Oct 6, 2021

Refactoring/optimization of IsoformPlot

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

plottingRelated to plotting and visualizationRelated to plotting and visualization

postponedThis should be handled in the future, but is low priority right nowThis should be handled in the future, but is low priority right now

Status: Open.

#88 In sheynkman-lab/biosurfer;

· jsaquing opened on Oct 5, 2021

Refactor Exon to map against an association table between the transcript and exon tables

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

postponedThis should be handled in the future, but is low priority right nowThis should be handled in the future, but is low priority right now

Status: Open.

#85 In sheynkman-lab/biosurfer;

· jsaquing opened on Sep 24, 2021

ProteinAlignmentBlock should account for AA sequence matches

enhancementNew feature or requestNew feature or request

priorityhigh priority (should be addressed within the week)high priority (should be addressed within the week)

Status: Open.

#84 In sheynkman-lab/biosurfer;

· jsaquing opened on Sep 23, 2021

sQTL representations in biosurfer

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

Status: Open.

#73 In sheynkman-lab/biosurfer;

· gsheynkman opened on Sep 11, 2021

Associate expression data with Transcript/Junction/Exon objects

designhigh-level design ideas, brainstorminghigh-level design ideas, brainstorming

enhancementNew feature or requestNew feature or request

Status: Open.

#72 In sheynkman-lab/biosurfer;

· jsaquing opened on Sep 10, 2021

Detect experimentally sequenced transcripts that are subsets of other transcripts

enhancementNew feature or requestNew feature or request

Status: Open.

#59 In sheynkman-lab/biosurfer;

· jsaquing opened on Aug 16, 2021