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Save disk space and mark files as temp or protected

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#166 In snakemake-workflows/dna-seq-benchmark;

· famosab opened on Mar 6, 2026

Improve code readability

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#139 In snakemake-workflows/dna-seq-benchmark;

· famosab opened on Sep 8, 2025

Consider swapping to CRAM files

Status: Open.

Feature

#123 In snakemake-workflows/dna-seq-benchmark;

· famosab opened on Apr 23, 2025

Rethink design of report

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#121 In snakemake-workflows/dna-seq-benchmark;

· famosab opened on Apr 15, 2025

Streamline the use of .vcf.gz versus .bcf

Status: Open.

Bug

#117 In snakemake-workflows/dna-seq-benchmark;

· famosab opened on Apr 3, 2025

Allow the user to specific their own truth VCF file

Status: Open.

Feature

#103 In snakemake-workflows/dna-seq-benchmark;

· famosab opened on Oct 22, 2024

grch37: false can only be set once while grch37: true can be set per callset

priority

Status: Open.

Bug

#99 In snakemake-workflows/dna-seq-benchmark;

· famosab opened on Sep 3, 2024

P-value sorting happens only per chromosome not globally

Status: Open.

Feature

#97 In snakemake-workflows/dna-seq-benchmark;

· BiancaStoecker opened on Aug 16, 2024