(Closes #3032, #3031) updates to improve profiling

[arporter]

No description provided.

[arporter]

One for @sergisiso as he has a separate PR that brings profiling of NEMO into the integration tests.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 99.92%. Comparing base (c2ebc91) to head (4d580a4).

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #3033   +/-   ##
=======================================
  Coverage   99.92%   99.92%           
=======================================
  Files         365      365           
  Lines       51665    51671    +6     
=======================================
+ Hits        51624    51630    +6     
  Misses         41       41           

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[arporter]

Having improved the script, I immediately ran into more issues relating to #3031 so I'm going to fix those in this PR too.

[arporter]

I've made what I think are the necessary changes to PSyDataTrans.
I need to add tests and update the options arguments...

[arporter]

@LonelyCat124 has pointed out that he already has #3004 so I don't have to worry about the options here. Phew :-)

[arporter]

Ready for a first look now. I've fired off the integration tests "just in case".

[sergisiso]

@arporter I agree with the changes: not annotating with profiling wrappers elemental functions and removing the pure attribute of annotated routines. Also not annotating any function for NEMO as this have a big overhead. The integration tests are green, this is approved for merging.