An implementation of ESM2 in Equinox+JAX
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Apr 20, 2026 - Python
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esm2
Here are 40 public repositories matching this topic...
End-to-end protein function prediction from structure alone: active sites, binding pockets, GO terms, PPI partners, and drug candidates.
open-source bioinformatics cheminformatics protein-structure computational-biology drug-discovery protein-function-prediction alphafold esm2 active-site-prediction
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May 22, 2026 - Python
Prediction of anti-fungal proteins using protein language models
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May 8, 2026 - Python
AI-powered protein mutation analysis platform. Enter any UniProt ID, mutate a residue, and SERAPH, an original ESM2+CNN+BiLSTM model, predicts exactly which secondary structures change and why.
machine-learning bioinformatics deep-learning structural-biology nextjs protein-structure computational-biology pytorch bilstm secondary-structure-prediction cnn-bilstm protein-mutations fastapi framer-motion alphafold protein-language-model gemini-ai esm2 mutantscope
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Apr 22, 2026 - Jupyter Notebook
Repository of the paper "Exploring sequence landscape of biosynthetic gene clusters with protein language models" published at ICML2024 workshop Machine Learning for Life and Material Science: From Theory to Industry applications
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Apr 25, 2026 - Jupyter Notebook
Bioinformatics Kaggle project for prime editing RT activity prediction using leave-one-family-out cross-validation and CLS-oriented modeling.
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Apr 23, 2026 - Jupyter Notebook
Similarity search for protein sequences using ESM-2 embeddings and Approximate Nearest Neighbor (ANN) methods.
bioinformatics blast twilight-zone protein-embeddings remote-homology-detection esm2 protein-similarity
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Feb 25, 2026 - Python
Residue-residue contact prediction using ESM2 enhanced with template-based structural priors from homologous sequences.
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Oct 25, 2025 - Python
Unified Python library and CLI for protein structure prediction and inverse folding.
python cli bioinformatics deep-learning structural-biology transformers computational-biology pytorch protein-design inverse-folding protein-structure-prediction alphafold2 alphafold-multimer directed-evolution esmfold esm2 esm-if proteinmpnn ligandmpnn ai4protein
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Feb 16, 2026 - Python
Real-time, zero-shot Variant Effect Prediction (VEP) and in-silico mutagenesis engine powered by Meta's ESM-2. Achieves sub-second inference on edge and consumer hardware.
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Apr 16, 2026 - Python
Dual-scale (atom + residue) peptide property prediction with cross-attention fusion
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Apr 19, 2026 - Jupyter Notebook
Fine-tuning ESM-2 with LoRA for enzyme family classification. Homology-aware splitting, calibrated uncertainty, integrated gradients interpretability, and FastAPI inference. Built for production.
structural-biology pytorch drug-discovery lora uncertainty-quantification interpretability fine-tuning enzyme-classification protein-language-model esm2
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May 27, 2026
Zero-shot variant pathogenicity prediction via spectral covariance analysis of ESM2 hidden states | Claw4S 2026
bioinformatics computational-biology reproducibility clinvar spectral-analysis zero-shot variant-effect-prediction protein-language-model esm2 claw4s-2026
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Apr 22, 2026 - Python
MVP de cribado virtual asistido por IA y docking molecular con biblioteca botanica de Ecuador y Amazonia.
bioinformatics computational-biology xgboost drug-discovery rdkit virtual-screening molecular-docking autodock-vina drug-target-interaction esm2
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Apr 8, 2026 - Python
Reproducible Nextflow + Python pipeline for TCR-epitope binding prediction with Bayesian calibration
machine-learning bioinformatics nextflow immunology tcr bayesian-neural-networks epitope protein-language-model esm2 blosum62
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Apr 16, 2026 - Python
Federated learning framework for protein language models (ESM2) using NVFlare + Flower. Supports multi-GPU simulation, HPC/SLURM deployment, and HuggingFace dataset integration.
machine-learning bioinformatics pytorch flower federated-learning protein-language-model nvflare esm2
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Mar 15, 2026 - Python
ESM2-15B Protein Embeddings
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Aug 9, 2025 - Jupyter Notebook
Exploring the AMR protein embedding landscape with ESM2 and Ankh. Interactive tool at HuggingFace Spaces.
bioinformatics embeddings amr umap card-database antimicrobial-resistance protein-language-model esm2
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Apr 11, 2026 - HTML
🧬 CAFA6 Protein Function Prediction | Hybrid DL + BLAST Ensemble | Solo Participant | Public LB 0.283
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Mar 15, 2026 - Jupyter Notebook
TCR Epitope Generation Model with Top-K Prediction
machine-learning bioinformatics deep-learning transformer t-cell-receptor encoder-decoder-model cross-attention generative-ai esm2
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Oct 31, 2025 - Jupyter Notebook
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