vcfdist: Accurately benchmarking phased variant calls

Bioinformatics on GCP, AWS or Azure

AI and Omics Research Internship 2025

A tutorial on structural variant calling for short read sequencing data

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

Comprehensive design of CRISPR gRNAs for nucleases and base editors

Tool to estimate deltas for sequence sets and answer questions about relative contribution

A web application for interactive visualization and exploratory data analysis of variant call matrices

High performance bioinformatics library for Kotlin

This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects

gapped-kmer based whole genome alignment software

Structural variant calling tutorial using long-reads.

Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy

ML phylogenetic inference for non-model organisms with short reads & assemblies

Sparse factorization framework to integrate GWAS studies and identify shared latent genetic components

MAGIC - Multimodal Analysis of Genomics, Imaging and Clinical data

Analysis of SNP variants, derived from chip array genotyping and HTS sequencing

A GLUE project for hepatitis B virus (HBV).

Repository for population genetics and quantitative genetics metrics implementarion and visualization

R package for annotating and parsing transposable elements-associated data