Spatial Single Cell Analysis in Python
Learning cell communication from spatial graphs of cells
🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.
End-to-end CODEX multiplex IF analysis pipeline that includes cell segmentation, phenotyping, and spatial neighborhood analysis on the Schürch/Nolan CRC dataset
Spatial transcriptomics analysis using 10x Genomics Visium and Xenium platforms
Spatial transcriptomics pipeline for 10x Visium breast cancer data with spatial validation
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