Python3 command-line and GUI tools for common codon usage statistics given a FASTA of Coding sequences
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Dec 9, 2025 - Python
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synonymous-codons
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This is a set of simple python scripts to recode protein. This script can be used change codons in DNA of protein sequence.
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Jul 18, 2023 - Python
Compute codon autocorrelation from fasta CDS sequences (Novoa et al., Mol Biol Evol 2019)
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Dec 16, 2022 - R
SIRIUS is a synthetic biology tool that, given a peptide sequence, designs n maximally divergent gene sequences
synthetic-biology linear-programming combinatorial-optimization integer-linear-programming codon-optimization gene-design synonymous-codons
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Dec 12, 2025 - C++
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