Add new module: octopusv/plotcircos

[manascripts]

This PR adds octopusv/plotcircos module.

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Broadcast software version numbers to topic: versions - See version_topics
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda

[mashehu]

Suggested change

	file(process.out.circos.get(0).get(1)),
	process.out.findAll { key, val -> key.startsWith('versions') }
	sanitizeOutput(process.out, unstableKeys: ["oversized_intra"])

[manascripts]

I worked with the entire output as well actually

[manascripts]

The PDF checksum is unstable (metadata), maybe fixable with sanitizeOutput but the version command also seems to be problematic, switching back to the python command.

[mashehu]

what's the problem with the version command?

[mashehu]

oh, I see, it doesn't work in conda? weird I tested it locally...

[manascripts]

Yes, it's strange.
I was using nf-test test so didn't know this was failing. Will update in a bit.

[manascripts]

Finally it worked with the png, there seems to be an issue with the pdf checksum (even with sanitizeOutput), can add a test and capture the name or something, if you'd like!