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Pull requests: nf-core/modules

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Pull requests list

Update pre-commit hook astral-sh/ruff-pre-commit to v0.15.12 size/xs
#11453 opened May 1, 2026 by renovate Bot Loading…
2 tasks
Update dotnet monorepo size/xs
#11452 opened May 1, 2026 by renovate Bot Loading…
2 tasks
Update zip: topic versions, stub block, sanitizeOutput
#11451 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update whamg: topic versions, stub block, sanitizeOutput
#11450 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update wfmash: topic versions, stub block, sanitizeOutput
#11449 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update smoothxg: topic versions, stub block, sanitizeOutput
#11448 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update shovill: topic versions, stub block, sanitizeOutput
#11447 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update seqsero2: topic versions, stub block, sanitizeOutput
#11446 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update salsa2: topic versions, stub block, sanitizeOutput
#11445 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update raven: topic versions, stub block, sanitizeOutput
#11444 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update rasusa: topic versions, stub block, sanitizeOutput
#11443 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update ncbigenomedownload: topic versions, stub block, sanitizeOutput
#11442 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update mygene: topic versions, stub block, sanitizeOutput
#11441 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Update filtlong: topic versions, stub block, sanitizeOutput
#11440 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Update fasttree: topic versions, stub block, sanitizeOutput
#11439 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
Add stub block and migrate plasmidid to topic channels
#11438 opened Apr 30, 2026 by HReed1 Contributor Loading…
1
Add stub block and migrate pairix to topic channels
#11437 opened Apr 30, 2026 by HReed1 Contributor Loading…
2
fix(kofamscan): migrate to topic versions and add stub testing
#11436 opened Apr 30, 2026 by HReed1 Contributor Loading…
8 tasks done
2
feat(islandpath): migrate to topic: versions tuple
#11435 opened Apr 30, 2026 by HReed1 Contributor Loading…
3
[module annotsv/annotsv] FIX: Overlapping 'tsv' and 'unannoted_tsv' outs
#11433 opened Apr 30, 2026 by tetedange13 Contributor Loading…
3 of 6 tasks
[module knotAnnotSV] FIX: Merge mutually exclusive outputs into 1 Ready for Review
#11432 opened Apr 30, 2026 by tetedange13 Contributor Loading…
9 of 11 tasks
feat(optitype): add stub block and migrate to topic channel versions
#11420 opened Apr 29, 2026 by HReed1 Contributor Loading…
@HReed1
4
feat(maltextract): add stub block and migrate to topic channel versions
#11419 opened Apr 29, 2026 by HReed1 Contributor Loading…
4
feat(medaka): add stub block and migrate to topic channel versions
#11417 opened Apr 29, 2026 by HReed1 Contributor Loading…
3
feat(hicap): migrate to topic channel versions (stub block already present)
#11416 opened Apr 29, 2026 by HReed1 Contributor Loading…
3
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