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New module suppa/psiperevents#12384

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piplus2 merged 3 commits into
nf-core:masterfrom
piplus2:master
Jul 19, 2026
Merged

New module suppa/psiperevents#12384
piplus2 merged 3 commits into
nf-core:masterfrom
piplus2:master

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@piplus2 piplus2 commented Jul 17, 2026

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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

This adds the module suppa/psiperevent that calculates psi values for alternative splicing analysis from the events file generated by suppa/generateevents and an expression matrix in tpm units.

@piplus2 piplus2 reopened this Jul 17, 2026

@dialvarezs dialvarezs left a comment

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LGTM!

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piplus2 added this pull request to the merge queue Jul 19, 2026
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piplus2 commented Jul 19, 2026

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thanks @dialvarezs !

Merged via the queue into nf-core:master with commit 6a06fc8 Jul 19, 2026
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2 participants