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WIP: nf-test update with Strict syntax#286

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maxulysse wants to merge 9 commits into
nf-core:devfrom
maxulysse:strict_syntax_full
Open

WIP: nf-test update with Strict syntax#286
maxulysse wants to merge 9 commits into
nf-core:devfrom
maxulysse:strict_syntax_full

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnavar branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

Comment thread .github/workflows/nf-test.yml Outdated
Comment thread tests/default.nf.test.snap Outdated
Comment thread nextflow.config Outdated
Comment thread README.md Outdated
Co-authored-by: Maxime U Garcia <max.u.garcia@gmail.com>
@maxulysse maxulysse changed the title nf-test update WIP: nf-test update with Strict syntax Mar 30, 2026
# Conflicts:
#	.github/workflows/nf-test.yml
Comment thread .github/workflows/nf-test.yml Outdated
Co-authored-by: Maxime U Garcia <max.u.garcia@gmail.com>
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2 participants