First time setup page#180
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June 30, 2026 10:30
MattWellie
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Creates a super generic "First Time Setup" page, referenced in the main README ahead of all the other pages. Could eventually be migrated to Confluence. Contains installation advice/instructions for:
With required authentication commands for each service auth added to the guides.
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On a completely fresh install I confirmed that a homebrew installation of
bcftoolsdoes work fine. It didn't work on my M5 MBA, so unsure if I experienced a blip, or if there is a real reason my local install was broken. Either way, I've added a section at the start of thebcftools and samtoolsinstallation doc to confirm that homebrew is an easier way, and that guide should only be used as a last resort.The authentication section on that guide is explicitly referenced from elsewhere, as it's relevant no matter how the tools are installed.